Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10378g00002 ATGGGATTTGAACAGGACACAGTTCTGGTACCTCCTTGGCTGGAACAACTTCTTCACACACCTTTCTTCAATGTTTGTCGAATTCACGCAGACGCAGCCAGGAGTGAATGTAACATGTTTTGTTTAGATTGCAATGGCGAAGCCTTCTGTTTTTATTGCCGTTCTTCTCGACACAAAGATCATCGAGTCATTCAGATAAGAAGATCTTCGTATCATGATGTAGTGAGGGTGGCTGAAATTGAGAGGGTGTTGGACATAAGTGGAGTGCAGACATATGTGATAAACAGTGCTCGAGTTTTGTTCTTGAATGTGAGGCCACAACCAAAATCTGGGAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCATTTCGCTTCTGTTCTTTGGGATGTAAGCTTGAAGGAATAAAGAAAAATGGGGATGCAAGCTTTGCTTTGGATGGTAGAAATGAAGAATTGACAATGGAGACTACCACCACTACCACTACATCAACTTCAAGAGGATCAGTCTCATCAAATAAGCAAGAAGAAGGATTGCGTGAAGGTTCAACACAAGACATGTATCAAGTCACACCTCCTTCAAACGCAAGGAGAAGAAAAGGAATTCCTCATAGGGCACCCTTTGCCTCCTAA 648 0.4275 MGFEQDTVLVPPWLEQLLHTPFFNVCRIHADAARSECNMFCLDCNGEAFCFYCRSSRHKDHRVIQIRRSSYHDVVRVAEIERVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLEGIKKNGDASFALDGRNEELTMETTTTTTTSTSRGSVSSNKQEEGLREGSTQDMYQVTPPSNARRRKGIPHRAPFAS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10378g00002 215 MobiDBLite consensus disorder prediction 155 215 - -
Vium10378g00002 215 SUPERFAMILY B-box zinc-binding domain 20 67 - -
Vium10378g00002 215 Pfam PLATZ transcription factor 67 138 IPR006734 -
Vium10378g00002 215 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 8 213 - -
Vium10378g00002 215 MobiDBLite consensus disorder prediction 157 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10378g00002 Vium-Chr10378 4106 5937 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vium10378g00002 PLATZ 2.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10378g00002 - - gmx:100803076 378.252