Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10378g00001 ATGGACACAGTTCTGGTACCTCCTTGGCTGGAACAACTTCTTCACACACCTTTCTTCAATGTTTGTCGAATTCACGCAGACGCAGCCAGGAGTGAATGTAACATGTTTTGTTTAGATTGCAATGGCGAAGCCTTCTGTTTTTATTGCCGTTCTTCTCGACACAAAGATCATCGAGTCATTCAGATAAGAAGATCTTCGTATCATGATGTAGTGAGGGTGGCTGAAATTGAGAGGGTGTTGGACATAAGTGGAGTGCAGACATATGTGATAAACAGTGCTCGAGTTTTGTTCTTGAATGTGAGGCCACAACCAAAATCTGGGAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCATTTCGCTTCTGTTCTTTGGGATGTAAGCTTGAAGGAATAAAGAAAAATGGGGATGCAAGCTTTGCTTTGGATGGTAGAAATGAAGAATTGACAATGGAGACTACCACCACTACCACTACATCAACTTCAAGAGGATCAGTCTCATCAAATAAGCAAGAAGAAGGATTGCGTGAAGGTTCAACACAAGACATGTATCAAGTCACACCTCCTTCAAACGCAAGGAGAAGAAAAGGAATTCCTCATAGGGCACCCTTTGCCTCCTAA 636 0.4277 MDTVLVPPWLEQLLHTPFFNVCRIHADAARSECNMFCLDCNGEAFCFYCRSSRHKDHRVIQIRRSSYHDVVRVAEIERVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLEGIKKNGDASFALDGRNEELTMETTTTTTTSTSRGSVSSNKQEEGLREGSTQDMYQVTPPSNARRRKGIPHRAPFAS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10378g00001 211 MobiDBLite consensus disorder prediction 151 211 - -
Vium10378g00001 211 SUPERFAMILY B-box zinc-binding domain 16 63 - -
Vium10378g00001 211 MobiDBLite consensus disorder prediction 153 193 - -
Vium10378g00001 211 Pfam PLATZ transcription factor 63 134 IPR006734 -
Vium10378g00001 211 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10378g00001 Vium-Chr10378 3741 5937 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vium10378g00001 PLATZ 2.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10378g00001 - - gmx:100803076 376.711