Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10364g00002 ATGGGATTCTATCTTAATCTCAAATTCAAGGCGTTTCGGTTGAAACGGTTTCTGCTTGGACATGGACGCAGAAAAAGAAAGCACAAGGTGGCAAAGAAGCCCTCGTGGATGATGCCAATGACATATGGTTATCATGTGGTGGAACATAATATGAGCAGAGATGATTCTGATAACTCGGACTTTGATTCAGTTGTGGCACAGAGAGAGGAAATGAATCAAACAGAGTTGTGGTATTTTGGAATATTTGATGCACTGATTGGAGACAGGGTTAGCAAGTACATGCAGTCTCATTTCTTTGACAAGAAGCTTCAAGAGACTCGTTTAAGCAGTAAAAGTAAGGAAACTCTGAAGAGAGCTTACCATGGCGTAAGAGCAAAGATTAGAGAGGAACACAAATTAGAGGAGACATGCAGAATGGGTTCAGCATCTGTTATACTGATCAATGGAGAAAAACTTGTAGTGGCCAACATGGGGGATTACAGAACTGTTGTGTGCAGAGATGGAATAGCTCATCAGACAACTGGCACATACCGACGAATAGAAAAAATGCACTGGTCTCGCCGACTCTTTGCAGGATTCATGCTAGGATGTCAATCAGGAAATGCAAAACATTATAGAGGCTCCGATTTTGCGGTTAGAAGTGAAGTGCTTGATTCTGGTACTGAATTTTTGATATTAGCAAGCAATGGCATATGGGAGGTGATGAAAAACCAAGAGGCTGTGAATCTGATCAGTCACATAGAGGATCCACAAGAAGCAGCTGAATGCTTGGCAAAGGAAGCTTTAATTAGGATGACCAAAAGCAACATCTCATGCTTAATCATTCGTTTTGACTGA 837 0.4146 MGFYLNLKFKAFRLKRFLLGHGRRKRKHKVAKKPSWMMPMTYGYHVVEHNMSRDDSDNSDFDSVVAQREEMNQTELWYFGIFDALIGDRVSKYMQSHFFDKKLQETRLSSKSKETLKRAYHGVRAKIREEHKLEETCRMGSASVILINGEKLVVANMGDYRTVVCRDGIAHQTTGTYRRIEKMHWSRRLFAGFMLGCQSGNAKHYRGSDFAVRSEVLDSGTEFLILASNGIWEVMKNQEAVNLISHIEDPQEAAECLAKEALIRMTKSNISCLIIRFD 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10364g00002 278 SMART PP2C_4 51 275 IPR001932 -
Vium10364g00002 278 SUPERFAMILY PP2C-like 39 278 IPR036457 -
Vium10364g00002 278 Gene3D - 44 278 IPR036457 -
Vium10364g00002 278 ProSiteProfiles PPM-type phosphatase domain profile. 58 277 IPR001932 -
Vium10364g00002 278 PANTHER PROTEIN PHOSPHATASE 34 276 IPR015655 GO:0004722|GO:0006470
Vium10364g00002 278 Pfam Protein phosphatase 2C 66 173 IPR001932 -
Vium10364g00002 278 Pfam Protein phosphatase 2C 217 270 IPR001932 -
Vium10364g00002 278 CDD PP2Cc 78 277 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10364g00002 Vium-Chr10364 7281 9974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10364g00002 1 277 PP2C-type Phosphatase Gene Family AT3G23360 46.263 2.50e-77 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10364g00002 K19704 - gmx:100785227 453.751