Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10344g00001 ATGGATGCTTTATCTTTAAGTTCAAGTTCAAGCCTAAACATGTACAAGCCCTTTCAATCTCATGGCCTTCCACAGCAAAGAGTTTCCACAGTGAAGTTTGGTACTGTTTCATGCAGAGCCACAACCCAAGAAAACTTGTACAAGGTACTGTCTGTGAGTCCGGAAAGAGCAACAATGGATGAGATTAAGAGGGCTTATAGATCTATGGCTCTAAGGTACCACCCTGATGTGTGCCACGATCCCACCATGAAAGAGGAGTCTACGAGGCTGTTTGTGCAGGAGAATGCAGCTTACAAGACCTTGTCCAATCCAAGGCTTCGAGAACAGTACGACAGTGAATTGGGTCTGAGAAGCCAAGTCATGAGTGTTAGTAGAGATCATGAAAGATGGGGAAGTGTGAGTGTTTGTAGTGATTTTGAGAGATGGGGAAGTAAGTTTCAGGAGGAAGTGATTGAGGTGAAGACAAGGTCTCGTAGACGAATGGGACAAAAGGGAGGATCATCAGCTACCAGAATGAGAACACAAAACATGAAAGACAGACATTGA 546 0.4432 MDALSLSSSSSLNMYKPFQSHGLPQQRVSTVKFGTVSCRATTQENLYKVLSVSPERATMDEIKRAYRSMALRYHPDVCHDPTMKEESTRLFVQENAAYKTLSNPRLREQYDSELGLRSQVMSVSRDHERWGSVSVCSDFERWGSKFQEEVIEVKTRSRRRMGQKGGSSATRMRTQNMKDRH 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10344g00001 181 CDD DnaJ 45 103 IPR001623 -
Vium10344g00001 181 SUPERFAMILY Chaperone J-domain 26 110 IPR036869 -
Vium10344g00001 181 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 30 179 - -
Vium10344g00001 181 SMART dnaj_3 44 106 IPR001623 -
Vium10344g00001 181 ProSiteProfiles dnaJ domain profile. 45 114 IPR001623 -
Vium10344g00001 181 PRINTS DnaJ domain signature 48 66 IPR001623 -
Vium10344g00001 181 PRINTS DnaJ domain signature 66 81 IPR001623 -
Vium10344g00001 181 PRINTS DnaJ domain signature 86 106 IPR001623 -
Vium10344g00001 181 MobiDBLite consensus disorder prediction 155 181 - -
Vium10344g00001 181 Pfam DnaJ domain 45 111 IPR001623 -
Vium10344g00001 181 Gene3D DnaJ domain 32 131 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10344g00001 Vium-Chr10344 261 952 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10344g00001 47 121 C2H2 Transcription Factor Family AT1G74250 40.260 1.09e-06 46.2