Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10340g00002 ATGGCGGCTTCAGTCGACAACCGTCCGTTCACCGTCCACCAACACCCCGTCGTTCGCTCCTACAAGCCTGCTCCGGAACTCCCGCGTCCTATCAAGCTACCCCTCCCACCACCACCCTCCGATTCCTCAAGCGACGACGAAGAAGAAACCTCTGTGTTGAAGGAACTCATTCTAAAGTCCAGCGTGGAAGTTGAATCCTCCATTTTCGACCCTCGCGACGATGGAACCTCCGACCACTGGGTCAAACGGAACGCTTCCCTGATCCGGTTGACGGGGAAGCACCCCTTAAACTCGGAGCCACCCCTCTCTCGTCTCATGCACCACGGTTTCATCACTCCGGTTCCCCTCCACTACGTCCGTAACCACGGGCCCGTGCCACGGGCTCGCTGGGAGGACTGGACCGTTGAGGTCAAGGGCCTCGTTAGTCGGCCCACGTGCTTCACCATGGAGCAGCTGCTCCACGACTTTCCCATCCGCGAGTTCCCTGCCACACTTGTCTGCGCTGGGAACAGGCGCAAGGAACAGAACATGGTGAAACAGAGCATCGGCTTCCACTGGGGGCCCGCCGCCATATCTACTTCGGTGTGGCGCGGTATACCGTTGCGGACCCTGTTGAAGCGGTGCGGGATCTACAGCCGCTCGAAGGGAGCCCTTCACGTGTGATTCGAAGGCTCCGAGGATCTGCCAGCTGACGGTGGGTCAAAGTACGGGACCAGTATCACGAGGGAGGTTGCACTCGATCCCTCTCGCGACATCATCCTCGCTTACATGCAAAACGGGGAGCTTTTGTCCCCGGATCATGGCTTCCCCGTTAGGGTGATAATACCCGGTTTCGTGGGTGGCCGCATGGTGAAATGGTTGAAGCGCATCGTTGTCTCTACCCAGAAATCAAAAAGCTATTACCATTACATGGATAACAGGGTGCTTCCATCTCACGTTGATGCCGAACTTGCCAATGCAGAAGCTTGGTGGTACAAGCCAGAGTATTGCATCAACGAGGTCAACATAAACTCCGTCATAACAACGCCCTCTCACGAAGAGATCTTGCCCATCAACTCATGGACTACTCAGATGCCTTATTTCATCAGAGGCTATGCCTATTCCGGAGGTGGGAGAAAGGTGACACGTGTGGAGGTAACGCTGGACGGTGGTGAAACGTGGCAAGTGTGCAGCGTGGAATGTCCGGAGAAGCCGAACAAATATGGGAAGTACTGGTGTTGGTGTTTCTGGTCCTTGGAGGTGGAGGTGTTGGATCTTCTCGCAGCAAAAGATATTGCGGTGCGAGCTTGGGACGAGGCCCTCAACACCCAGCCAGAGAAACTCATCTGGAATGTTTTGGGAATGATGAACAACTGCTGGTTCAGAGTGAAGACAAACGTGTGCAAGCCGAAGAAGGGTGAGATTGGTATAGTGTTCGAGCACCCCACCCAACCAGGCAACCAATCTGGCGGATGGATGGGAAGAGAGAGGCAGCTGGATATATCATCGGAGTCCAACCCATCCCTCAAGAAGAGTGTTTCCTCCCCATTCATGAACACAACCACTAAAACCTATTCCATCTCCGAAGTCAGAAGACACAACAACCGAGATTCGGCTTGGATCATAGTCAACGGCCATGTCTACGATTGCACCCGCTTCCTCAAAGACCATCCTGGAGGCGAAGATAGCATCCTCATCAACGCCGGCACCGACTGTACCGAGGAGTTCGAAGCCATTCACTCCGGAAAAGCCAAGGAAATGCTCCAAGACTACCGAATCGGTGAGCTCATGACCACCGACTACACCTCTGACTCCTCTTCCCCCAACTCCTCCGTACATGGCAATTCTGAAACCACCCACTTGGCCCCAATCAGGGAAGTGGCTCTCAACCCACGCGAGAAAATCCCATGCAAGCTCCTCTCCAGAACCTCCATCTCCAACGACGTCAGGCTCCTCCGCTTTGCGTTACCCAGCGAGGACCAGCTGATGGGTTTGCCAGTCGGGAAGCACGTATTCTTATGTGCCACTGTCGACGAGAAGCTATGCATGCGAGCCTACACCCCCACAAGCAGTGTAGATGAAGTGGGTATCTTTGACCTCGTCGTCAAGGTTTACTTCAAAGGAGTGCATCCTAAATTCCCCAACGGTGGTACCATGTCTCAACACTTGGACTCGCTCCCCATTGGCTCTGTCTTGGACGTGAAAGGCCCACTAGGCCACATAGAATACACCGGCAGAGGAAACTTCCTCGTCCAGGGGAAGCCTAGGTTTGCCAAGAGGCTAGCCATGTTGGCTGGTGGCACCGGGATCACACCCATCTACCAAGTGGTTCAAGCCATTCTGAAGGACCCAGAGGACCACACCGAAATGCATGTGGTGTACGCGAATCGAACCGAGGATGATATATTGCTGAGAGAGGAGCTTGATGAATGGGCTAAGAAACATGACAGGCTCAAGGTGTGGTACGTGGTGCAAGAAAGCATAAGAGAAGGATGGGAATACAGTGTGGGGTTCATGACCGAGACTATCCTCCGAGAGCATGTACCAACTGCATCTCCTGATACCTTGGCGTTAACTTGTGGTCCACCTCCCATGATTCAGTTTGCGGTGAAACCCAATTTGGAGAAGTTGGGCTACGACATCCACAACGACTTGCTTGTGTTTTAG 2646 0.5393 MAASVDNRPFTVHQHPVVRSYKPAPELPRPIKLPLPPPPSDSSSDDEEETSVLKELILKSSVEVESSIFDPRDDGTSDHWVKRNASLIRLTGKHPLNSEPPLSRLMHHGFITPVPLHYVRNHGPVPRARWEDWTVEVKGLVSRPTCFTMEQLLHDFPIREFPATLVCAGNRRKEQNMVKQSIGFHWGPAAISTSVWRGIPLRTLLKRCGIYSRSKGALHVXFEGSEDLPADGGSKYGTSITREVALDPSRDIILAYMQNGELLSPDHGFPVRVIIPGFVGGRMVKWLKRIVVSTQKSKSYYHYMDNRVLPSHVDAELANAEAWWYKPEYCINEVNINSVITTPSHEEILPINSWTTQMPYFIRGYAYSGGGRKVTRVEVTLDGGETWQVCSVECPEKPNKYGKYWCWCFWSLEVEVLDLLAAKDIAVRAWDEALNTQPEKLIWNVLGMMNNCWFRVKTNVCKPKKGEIGIVFEHPTQPGNQSGGWMGRERQLDISSESNPSLKKSVSSPFMNTTTKTYSISEVRRHNNRDSAWIIVNGHVYDCTRFLKDHPGGEDSILINAGTDCTEEFEAIHSGKAKEMLQDYRIGELMTTDYTSDSSSPNSSVHGNSETTHLAPIREVALNPREKIPCKLLSRTSISNDVRLLRFALPSEDQLMGLPVGKHVFLCATVDEKLCMRAYTPTSSVDEVGIFDLVVKVYFKGVHPKFPNGGTMSQHLDSLPIGSVLDVKGPLGHIEYTGRGNFLVQGKPRFAKRLAMLAGGTGITPIYQVVQAILKDPEDHTEMHVVYANRTEDDILLREELDEWAKKHDRLKVWYVVQESIREGWEYSVGFMTETILREHVPTASPDTLALTCGPPPMIQFAVKPNLEKLGYDIHNDLLVF 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10340g00002 881 Gene3D - 333 507 - -
Vium10340g00002 881 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 625 737 IPR017927 GO:0016491
Vium10340g00002 881 Pfam Oxidoreductase NAD-binding domain 756 863 IPR001433 GO:0016491
Vium10340g00002 881 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 71 331 IPR036374 -
Vium10340g00002 881 PANTHER SULFITE REDUCTASE 70 463 - -
Vium10340g00002 881 MobiDBLite consensus disorder prediction 592 611 - -
Vium10340g00002 881 CDD cyt_b5_reduct_like 630 873 - -
Vium10340g00002 881 PRINTS Eukaryotic molybdopterin domain signature 331 343 IPR008335 GO:0016491
Vium10340g00002 881 PRINTS Eukaryotic molybdopterin domain signature 403 413 IPR008335 GO:0016491
Vium10340g00002 881 PRINTS Eukaryotic molybdopterin domain signature 174 186 IPR008335 GO:0016491
Vium10340g00002 881 PRINTS Eukaryotic molybdopterin domain signature 280 293 IPR008335 GO:0016491
Vium10340g00002 881 PRINTS Eukaryotic molybdopterin domain signature 247 263 IPR008335 GO:0016491
Vium10340g00002 881 PRINTS Eukaryotic molybdopterin domain signature 88 102 IPR008335 GO:0016491
Vium10340g00002 881 PRINTS Eukaryotic molybdopterin domain signature 376 388 IPR008335 GO:0016491
Vium10340g00002 881 PRINTS Eukaryotic molybdopterin domain signature 428 440 IPR008335 GO:0016491
Vium10340g00002 881 PRINTS Eukaryotic molybdopterin domain signature 110 126 IPR008335 GO:0016491
Vium10340g00002 881 PRINTS Eukaryotic molybdopterin domain signature 264 277 IPR008335 GO:0016491
Vium10340g00002 881 PRINTS Eukaryotic molybdopterin domain signature 441 454 IPR008335 GO:0016491
Vium10340g00002 881 PRINTS Eukaryotic molybdopterin domain signature 362 376 IPR008335 GO:0016491
Vium10340g00002 881 PRINTS Eukaryotic molybdopterin domain signature 163 174 IPR008335 GO:0016491
Vium10340g00002 881 PRINTS Eukaryotic molybdopterin domain signature 189 204 IPR008335 GO:0016491
Vium10340g00002 881 Gene3D - 511 594 IPR036400 -
Vium10340g00002 881 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 724 875 IPR039261 -
Vium10340g00002 881 FunFam Sulfite oxidase, mitochondrial 513 594 - -
Vium10340g00002 881 FunFam Nitrate reductase 74 323 - -
Vium10340g00002 881 FunFam Nitrate reductase 333 509 - -
Vium10340g00002 881 Gene3D - 732 881 IPR039261 -
Vium10340g00002 881 MobiDBLite consensus disorder prediction 27 41 - -
Vium10340g00002 881 Pfam Oxidoreductase FAD-binding domain 630 736 IPR008333 -
Vium10340g00002 881 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 515 590 IPR001199 -
Vium10340g00002 881 SMART Cyt_b5_2 518 590 IPR001199 -
Vium10340g00002 881 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 513 594 IPR036400 -
Vium10340g00002 881 FunFam NADH-cytochrome b5 reductase 617 731 - -
Vium10340g00002 881 SUPERFAMILY E set domains 333 460 IPR014756 -
Vium10340g00002 881 Pfam Oxidoreductase molybdopterin binding domain 122 301 IPR000572 -
Vium10340g00002 881 MobiDBLite consensus disorder prediction 1 52 - -
Vium10340g00002 881 FunFam Nitrate reductase [NADH] 732 881 - -
Vium10340g00002 881 CDD eukary_NR_Moco 73 458 - -
Vium10340g00002 881 SUPERFAMILY Riboflavin synthase domain-like 618 737 IPR017938 -
Vium10340g00002 881 Gene3D Translation factors 617 731 - -
Vium10340g00002 881 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 549 559 IPR001709 GO:0016491
Vium10340g00002 881 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 849 857 IPR001709 GO:0016491
Vium10340g00002 881 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 677 684 IPR001709 GO:0016491
Vium10340g00002 881 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 825 841 IPR001709 GO:0016491
Vium10340g00002 881 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 781 790 IPR001709 GO:0016491
Vium10340g00002 881 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 793 804 IPR001709 GO:0016491
Vium10340g00002 881 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 755 774 IPR001709 GO:0016491
Vium10340g00002 881 PRINTS Cytochrome B5 signature 540 550 IPR001199 -
Vium10340g00002 881 PRINTS Cytochrome B5 signature 565 572 IPR001199 -
Vium10340g00002 881 PRINTS Cytochrome B5 signature 577 589 IPR001199 -
Vium10340g00002 881 PRINTS Cytochrome B5 signature 550 564 IPR001199 -
Vium10340g00002 881 Pfam Mo-co oxidoreductase dimerisation domain 329 460 IPR005066 GO:0016491|GO:0030151
Vium10340g00002 881 Gene3D - 72 323 IPR036374 -
Vium10340g00002 881 Pfam Cytochrome b5-like Heme/Steroid binding domain 521 589 IPR001199 -
Vium10340g00002 881 PIRSF Nitr_rd_NADH 8 880 IPR012137 GO:0006809|GO:0042128|GO:0050464
Vium10340g00002 881 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 139 174 IPR022407 GO:0043546
Vium10340g00002 881 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 546 553 IPR018506 GO:0020037
Vium10340g00002 881 PRINTS Cytochrome B5 reductase signature 656 667 - -
Vium10340g00002 881 PRINTS Cytochrome B5 reductase signature 849 857 - -
Vium10340g00002 881 PRINTS Cytochrome B5 reductase signature 677 684 - -
Vium10340g00002 881 PRINTS Cytochrome B5 reductase signature 755 774 - -
Vium10340g00002 881 PRINTS Cytochrome B5 reductase signature 793 804 - -
Vium10340g00002 881 PRINTS Cytochrome B5 reductase signature 722 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10340g00002 Vium-Chr10340 22874 26969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10340g00002 618 872 NADPH P450 reductases AT5G17770 38.372 4.87e-48 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10340g00002 K10534 - gmx:732634 1534.24