Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1033g00005 ATGGATGGTATGTCAGCGAAGAAAACCGTGTTCATCATTGGGGCCACTAATCGACCAGACATTATAGATCCTGCTCTTCTGCGACCGGGCCGTCTGGATCAATTGATTTATATCCCACTCCCAGATGAGGATTCCCGTCATCAGATATTTAAAGCTTGTTTGAGAAAATCTCCTGTTTCAAAAGATGTTGACCTTAGAGCTCTGGCCAAGTATACTCAGGGCTTCAGTGGTGCAGATATCACTGAAATTTGCCAGCGTGCATGCAAGTATGCTATAAGGGAGAACATTGAGAAGGACATTGAGAGAGAGAGGAGGAAAAGAGATAACCCTGAGGCAATGGAAGAGGATATTGAAGAGGAAGAGGTAGCTGAAATCAAGGCAGCTCATTTTGAGGAGTCAATGAAATATGCACGAAGGAGTGTAAGCGATGCTGATATTCGCAAGTACCAGGCGTTTGCTCAGACATTGCAGCAGTCAAGAGGGTTTGGATCCGAGTTTAGGTTTTCAGATACCAGCACTGGTGGTGCTGGTGCTGGCACTGCATCTGACCCTTTTGCAAGTGCTGGTGGAGCTGATGAAGATGATCTTTACAGTTAG 597 0.4573 MDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRKRDNPEAMEEDIEEEEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSDTSTGGAGAGTASDPFASAGGADEDDLYS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1033g00005 198 Gene3D - 44 153 - -
Vium1033g00005 198 ProSitePatterns AAA-protein family signature. 10 28 IPR003960 GO:0005524|GO:0016887
Vium1033g00005 198 Pfam ATPase family associated with various cellular activities (AAA) 1 40 IPR003959 GO:0005524|GO:0016887
Vium1033g00005 198 Gene3D - 1 41 IPR027417 -
Vium1033g00005 198 Pfam AAA+ lid domain 62 102 IPR041569 -
Vium1033g00005 198 MobiDBLite consensus disorder prediction 163 198 - -
Vium1033g00005 198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 154 IPR027417 -
Vium1033g00005 198 PANTHER AAA-FAMILY ATPASE 1 159 - -
Vium1033g00005 198 MobiDBLite consensus disorder prediction 163 178 - -
Vium1033g00005 198 Pfam Vps4 C terminal oligomerisation domain 115 154 IPR015415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1033g00005 Vium-Chr1033 43576 44713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1033g00005 1 98 Calmodulin-binding Proteins AT3G56690 41.414 6.06e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1033g00005 K13525 - pvu:PHAVU_L002400g 345.51