Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10332g00003 ATGGCGATGACGCAAGGGGTGCAGAAAAACACGCTGTACGTGGGAGGGTTAGCGGAGGAGGTCAACGAGTCAATCCTCCACGCCGCCTTCATCCCCTTCGGCGACATCAAGGACGTCAAGACGCCACTTGACCAGGCCACGCAGAAGCACCGCTCATTCGGCTTCGTCACCTTCCTCGAACGCGAAGATGCCACCGCCGCCATGGACAACATGGACGGTGCTGAGCTCTATGGCCGCGTCCTCACCGTCAACTACGCCCTCCCCGAACGCATCAAAGGCGGTGAACAGGGCTGGGCCGCCCAACCTATTTGGGCGGATGCCGATACCTGGTTTGAGCGCCAGCAGCAGGAGGAGGAGATGCGGCGGATTGAGGCGGAGAATCGCGCGGCAATGCAGGCGGCGGAGGATTTGCACCGAAAACAAGTGGCTGAACAGCGAGAGGGAGAGAAGGAAGAGGAAGTTGAGATCAAGGATGATCCTATGGCCAAGGCTGAAGCTGAGGTTCTAGGACAATAG 516 0.593 MAMTQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDATAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRAAMQAAEDLHRKQVAEQREGEKEEEVEIKDDPMAKAEAEVLGQ 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10332g00003 171 MobiDBLite consensus disorder prediction 130 171 - -
Vium10332g00003 171 SMART rrm1_1 11 84 IPR000504 GO:0003723
Vium10332g00003 171 FunFam Peptidyl-prolyl cis-trans isomerase 2 155 - -
Vium10332g00003 171 CDD RRM_PPIE 12 86 IPR034168 GO:0003723
Vium10332g00003 171 Gene3D - 2 156 IPR012677 -
Vium10332g00003 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Vium10332g00003 171 PANTHER ATPASE E1 2 171 - -
Vium10332g00003 171 MobiDBLite consensus disorder prediction 130 164 - -
Vium10332g00003 171 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Vium10332g00003 171 Coils Coil 113 140 - -
Vium10332g00003 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10332g00003 Vium-Chr10332 13896 15379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10332g00003 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 3.31e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10332g00003 - - gmx:100809447 305.449