Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1032g00001 ATGGAAGAAGTCAGTTTCAGTGAGGAGAAATTTGTCACTTACAAGCACGTCGACCATGGTATTTTGAATCAAACAGCAAAGGTAGTTCGGATCTCGATGATGGATGCAGATGTCACAGATGATGAAGACGAAGGATTAGTTAAACTTCATAAGACAAAGAAGATTGTGAATGAGATCAGAATAGTGAAGAAGAAACCTTCAACCAGTGTGTCAGTGAAACAACACATTAAAGAGCCTGGTAGAAGAAAGTTTAGAGGAGTTCGTCAAAGACCATGGGGAAGATGGGCAGCAGAAATCAGAGATCCTTTCAAGCAAACAAGAATCTGGTTAGGGACTTATAACACTGCTGAAGAAGCTGCCATGGTTTATGACAAAGCAGCTATTAGTTTCAGAGGTTGTCATGCTCTCACTAATTTTATCAAACCTCCTACAATGGAAGACATACACAAGTCTTCTACCCAGGAAGACATGCCTATGGAAGACATGCACAAGTCTTACACCAAGGAAGACATGCTTACAATGGAAGACATGCACAAGTCTTCTACCAAGGAAGACATGCCTACAATGGAAGACATGCACATGGATGCTGTTTCTTTTGAGTATGGTTGTTATGATGAATCTCAAGGTAGTTGGAGTGGTTTGGTTGAGAATGTGAGTGGTGGGGCTGGTTCAAGTAGAGAGTCTCATCTGTCTTCACCCACTTCTGTGCTGGGACTTCAACATGAGAAACATGAGAAACTTGTGCCGGAAGAAGTTTTTGAAACAGAGGGTTTGTTTATAGAAGATCCAAGTTTCGAAGATACTTTCTCTTTTGTAGATTTATATTTACCCTCCATTGATTTCAATTCTGGAATAGATTTCATGGTTGACACTAATGTAAAACCGTCTGATGACGATCGGTGTGATATTTCCCCTCTTGACAATGAGAATTTTCAATCATTCAACTGGGATATAGATAGTTACTTCAATGATCTTTCTTCTCCTAAGACATCTGGATGA 999 0.3994 MEEVSFSEEKFVTYKHVDHGILNQTAKVVRISMMDADVTDDEDEGLVKLHKTKKIVNEIRIVKKKPSTSVSVKQHIKEPGRRKFRGVRQRPWGRWAAEIRDPFKQTRIWLGTYNTAEEAAMVYDKAAISFRGCHALTNFIKPPTMEDIHKSSTQEDMPMEDMHKSYTKEDMLTMEDMHKSSTKEDMPTMEDMHMDAVSFEYGCYDESQGSWSGLVENVSGGAGSSRESHLSSPTSVLGLQHEKHEKLVPEEVFETEGLFIEDPSFEDTFSFVDLYLPSIDFNSGIDFMVDTNVKPSDDDRCDISPLDNENFQSFNWDIDSYFNDLSSPKTSG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1032g00001 332 CDD AP2 83 139 IPR001471 GO:0003700|GO:0006355
Vium1032g00001 332 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 241 - -
Vium1032g00001 332 FunFam Ethylene-responsive transcription factor 2 82 141 - -
Vium1032g00001 332 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Vium1032g00001 332 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Vium1032g00001 332 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Vium1032g00001 332 MobiDBLite consensus disorder prediction 218 238 - -
Vium1032g00001 332 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Vium1032g00001 332 Gene3D AP2/ERF domain 82 141 IPR036955 GO:0003700|GO:0006355
Vium1032g00001 332 SUPERFAMILY DNA-binding domain 83 139 IPR016177 GO:0003677
Vium1032g00001 332 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1032g00001 Vium-Chr1032 3936 5035 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1032g00001 1 168 AP2-EREBP Transcription Factor Family AT4G27950 39.691 3.20e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium1032g00001 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1032g00001 - - vum:124824749 672.544