Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10324g00003 ATGGTTTGTTCAGTGCATCTGCTTCCACTTCTCTTCCTCCTCCTCCTGGCTTTGCTCTTGAATCCAACATGTGTCTGTGGCAATGACGAGCTTAGAGCTCTGATGGACCTGAAATCCAGTTTGGATCCAGAGGGGCGATTTCTGTCCTCATGGACCATGGATGGCAACCCCTGTGGTGGTTACTTTGAGGGAGTCGCTTGCAATGAGAAGGGTCAGGTGGCAAATGTTTCTTTGCAGGGGAAAGGCCTTTCTGGGAGGCTTTCACCGGCCATTGGTGGACTTAAGCACTTGACAGGACTCTACTTGCATTACAATTCTTTGTATGGGGAGATTCCAAGGGAAGTTGCAAACTTGACTGAGCTCAGTGACTTGTACCTGAATGTCAATCATCTTTCTGGTGAAATCCGACCTGAGATTGGCAAGATGGAGAAGCTTCAAGTTTTACAGCTCTGTTATAATCAGTTAACAGGAAGCATACCTACACAGCTTGGCGATTTGAAAAAGCTCAGTGTTCTTGCTCTTCAGTCAAACCAGTTGGCTGGAGCTATCCCTGCTACCCTAGGAGATTTGGAAATATTGACGAGGCTAGATTTGAGTTCTAATAATCTCTTTGGTTCCATTCCCACTAAACTAGCCAATCTTCCTTCACTGCAAGTTCTGGATGTTCACAACAACACTCTCTCTGGGAATGTACCTACCGCTTTGAAGAGACTAGAGAATGGATTTGTGTATGAAAACAATGTGGGGTTATGTGGAGTTGGGTTTTCATCCTTGAAAGCTTGCACTGCTTCAAATAATGTTAATCTCACTCGACCTGAACCTTATGGAGCAGGAGTTGGAAGTATCTCTAGAGATATCCCAGAAACTGCTAATGTAAAGTTGCCTTGCAATACAACTCATTGCCAAAATCCATCTAAATCCAAACAAGCCACATCTATCACAGTTGGCATTGTTCTAGTAACAATTGCAGTATCAGCAATTGGTGTTTTGACCTTCACCGTGTATAGGCGGCGGAAACAAAAGCTTGGAAGTGCCTTTGATACTTCTGAAGGCCGACTAAGTACAGATCAAGCCAAGACTATATACAGGAAAAATGGATCTCCTTTGGTTAGCCTTGAGTATTCTAATGGGTGGGACCCTTTGGCTGATAGCAGGAATTTCAACGGGGATAAGCAAGATTTGTTCCAGAGTTTCAGGTTCAACTTGGAAGAAGTGGAGTCAGCTACTCAGTATTTCTCAGAGTTGAATCTGTTGGGGAAGAGCAACTTTAGTGCTACATATAAAGGGGTTTTGAGAGATGGATCTGCTGTTGCTATCAAGAGCATCAGTAAAACTAGTTGCAAATCAGATGAAGCTGAGTTTTTGAAGGGATTGAACATTTTGACCTCGCTGAGAAATGAACATTTAGTGAGGTTGAGAGGATTTTGTTGTTCAAGGGGACGAGGAGAATGCTTTCTGGTCTATGATTTTGTTCCTAATGGAAACCTTACACGCTACCTTGATGTGAAGGAAGGTGATGGAGAAGTTCTTGAATGGTCAACTAGAATTTCTATTGTGAAAGGAATTGCTAAAGGTATAGCATATTTACATGCACACAAATCAAACAAACCAGCCCTTGTTCACCAAAACATCTCAGCTGAGAAAGTGCTACTCGATCGGCGGTACAACCCGATGCTTTCAGATTCCGGCCTGTACAAGCTTCTCACCAATGACATTGTCTTCTCTGCACTAAAGGGTAGTGCAGCAAAGGGATACTTGGCTCCAGAATACACCACAACCGGCCGGTTCACGGAGAAAAGTGATGTTTATGCATTTGGAGTGCTTCTTTTCCAGATTATCACAGGGAAACAGAAGATCACAAGTGCAATGCGCCTTGCGGCAGAGTCCTTTACATTCCAAGAATTTATTGACCCGAATTTGCGTGGCAAGTTCTTTGAATATGAGGCAGCTAAACTAGCCAAAATGGCTTTACTTTGCTCCCATGAATCTCAGTTTGAGAGGCCAAGCATGGAAGCCATTGTTCAAGAACTGGGGAATTGTAGTAGCTTTTCTGACCTTTACCATTTTCATCTGATCATGGTTTGTTCAGTGCATCTGCTTCCACTTCTCTTCCTCCTCCTCCTGGCTTTGCTCTTGAATCCAACATGTGTCTGTGGCAATGACGAGCTTAGAGCTCTGATGGACCTGAAATCCAGTTTGGATCCAGAGGGGCGATTTCTGTCCTCATGGACCATGGATGGCAACCCCTGTGGTGGTTACTTTGAGGGAGTCGCTTGCAATGAGAAGGGTCAGGTGGCAAATGTTTCTTTGCAGGGGAAAGGCCTTTCTGGGAGGCTTTCACCGGCCATTGGTGGACTTAAGCACTTGACAGGACTCTACTTGCATTACAATTCTTTGTATGGGGAGATTCCAAGGGAAGTTGCAAACTTGACTGAGCTCAGTGACTTGTACCTGAATGTCAATCATCTTTCTGGTGAAATCCGACCTGAGATTGGCAAGATGGAGAAGCTTCAAGTTTTTCAGCTCTGTTATAATCAGTTAACAGGAAGCATACCTACACAGCTTGGCGATTTGAAAAAGCTCAGTGTTCTTGCTCTTCAGTCAAACCAGTTGGCTGGAGCTATCCCTGCTACCCTAGGAGATTTGGAAATATTGACGAGGCTAGATTTGAGTTCTAATAATCTCTTTGGTTCCATTCCCACTAAACTAGCCAATCTTCCTTCACTGCAAGTTCTGGATGTTCACAACAACACTCTCTCTGGGAATGTACCTACCGCTTTGAAGAGACTAGAGAATGGATTTGTGTATGAAAACAATGTGGGGTTATGTGGAGTTGGGTTTTCATCCTTGAAAGCTTGCACTGCTTCAAATAATGTTAATCTCACTCGACCTGAACCTTATGGAGCAGGAGTTGGAAGTATCTCTAGAGATATCCCAGAAACTGCTAATGTAAAGTTGCCTTGCAATACAACTCATTGCCAAAATCCATCTAAATCCAAACAAGCCACATCTATCACAGTTGGCATTGTTCTAGTAACAATTGCAGTATCAGCAATTGGTGTTTTGACCTTCACCGTGTATAGGCGGCGGAAACAAAAGCTTGGAAGTGCCTTTGATACTTCTGAAGGCCGACTAAGTACAGATCAAGCCAAGACTATATACAGGAAAAATGGATCTCCTTTGGTTAGCCTTGAGTATTCTAATGGGTGGGACCCTTTGGCTGATAGCAGGAATTTCAACGGGGATAAGCAAGATTTGTTCCAGAGTTTCAGGTTCAACTTGGAAGAAGTGGAGTCAGCTACTCAGTATTTCTCAGAGTTGAATCTGTTGGGGAAGAGCAACTTTAGTGCTACATATAAAGGGGTTTTGAGAGATGGATCTGCTGTTGCTATCAAGAGCATCAGTAAAACTAGTTGCAAATCAGATGAAGCTGAGTTTTTGAAGGGATTGAACATTTTGACCTCGCTGAGAAATGAACATTTAGTGAGGTTGAGAGGATTTTGTTGTTCAAGGGGACGAGGAGAATGCTTTCTGGTCTATGATTTTGTTCCTAATGGAAACCTTACACGCTACCTTGATGTGAAGGAAGGTGATGGAGAAGTTCTTGAATGGTCAACTAGAATTTCTATTGTGAAAGGAATTGCTAAAGGTATAGCATATTTACATGCACACAAATCAAACAAACCAGCCCTTGTTCACCAAAACATCTCAGCTGAGAAAGTGCTACTCGATCGGCGGTACAACCCGATGCTTTCAGATTCCGGCCTGTACAAGCTTCTCACCAATGACATTGTCTTCTCTGCACTAAAGGGTAGTGCAGCAAAGGGATACTTGGCTCCAGAATACACCACAACCGGCCGGTTCACGGAGAAAAGTGATGTTTATGCATTTGGAGTGCTTCTTTTCCAGATTATCACAGGGAAACAGAAGATCACAAGTGCAATGCGCCTTGCGGCAGAGTCCTTTACATTCCAAGAATTTATTGACCCGAATTTGCGTGGCAAGTTCTTTGAATATGAGGCAGCTAAACTAGCCAAAATGGCTTTACTTTGCTCCCATGAATCTCAGTTTGAGAGGCCAAGCATGGAAGCCATTGTTCAAGAACTGGGGAATTGTAGTAGCTGTCTTTGA 4131 0.435 MVCSVHLLPLLFLLLLALLLNPTCVCGNDELRALMDLKSSLDPEGRFLSSWTMDGNPCGGYFEGVACNEKGQVANVSLQGKGLSGRLSPAIGGLKHLTGLYLHYNSLYGEIPREVANLTELSDLYLNVNHLSGEIRPEIGKMEKLQVLQLCYNQLTGSIPTQLGDLKKLSVLALQSNQLAGAIPATLGDLEILTRLDLSSNNLFGSIPTKLANLPSLQVLDVHNNTLSGNVPTALKRLENGFVYENNVGLCGVGFSSLKACTASNNVNLTRPEPYGAGVGSISRDIPETANVKLPCNTTHCQNPSKSKQATSITVGIVLVTIAVSAIGVLTFTVYRRRKQKLGSAFDTSEGRLSTDQAKTIYRKNGSPLVSLEYSNGWDPLADSRNFNGDKQDLFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSAVAIKSISKTSCKSDEAEFLKGLNILTSLRNEHLVRLRGFCCSRGRGECFLVYDFVPNGNLTRYLDVKEGDGEVLEWSTRISIVKGIAKGIAYLHAHKSNKPALVHQNISAEKVLLDRRYNPMLSDSGLYKLLTNDIVFSALKGSAAKGYLAPEYTTTGRFTEKSDVYAFGVLLFQIITGKQKITSAMRLAAESFTFQEFIDPNLRGKFFEYEAAKLAKMALLCSHESQFERPSMEAIVQELGNCSSFSDLYHFHLIMVCSVHLLPLLFLLLLALLLNPTCVCGNDELRALMDLKSSLDPEGRFLSSWTMDGNPCGGYFEGVACNEKGQVANVSLQGKGLSGRLSPAIGGLKHLTGLYLHYNSLYGEIPREVANLTELSDLYLNVNHLSGEIRPEIGKMEKLQVFQLCYNQLTGSIPTQLGDLKKLSVLALQSNQLAGAIPATLGDLEILTRLDLSSNNLFGSIPTKLANLPSLQVLDVHNNTLSGNVPTALKRLENGFVYENNVGLCGVGFSSLKACTASNNVNLTRPEPYGAGVGSISRDIPETANVKLPCNTTHCQNPSKSKQATSITVGIVLVTIAVSAIGVLTFTVYRRRKQKLGSAFDTSEGRLSTDQAKTIYRKNGSPLVSLEYSNGWDPLADSRNFNGDKQDLFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSAVAIKSISKTSCKSDEAEFLKGLNILTSLRNEHLVRLRGFCCSRGRGECFLVYDFVPNGNLTRYLDVKEGDGEVLEWSTRISIVKGIAKGIAYLHAHKSNKPALVHQNISAEKVLLDRRYNPMLSDSGLYKLLTNDIVFSALKGSAAKGYLAPEYTTTGRFTEKSDVYAFGVLLFQIITGKQKITSAMRLAAESFTFQEFIDPNLRGKFFEYEAAKLAKMALLCSHESQFERPSMEAIVQELGNCSSCL 1376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10324g00003 1376 Gene3D Ribonuclease Inhibitor 29 139 IPR032675 -
Vium10324g00003 1376 Gene3D Ribonuclease Inhibitor 721 833 IPR032675 -
Vium10324g00003 1376 Gene3D Phosphorylase Kinase; domain 1 383 490 - -
Vium10324g00003 1376 Gene3D Phosphorylase Kinase; domain 1 1075 1182 - -
Vium10324g00003 1376 FunFam Protein NSP-INTERACTING KINASE 2 1183 1373 - -
Vium10324g00003 1376 FunFam Leucine-rich repeat receptor-like kinase 721 828 - -
Vium10324g00003 1376 FunFam Protein NSP-INTERACTING KINASE 2 140 262 - -
Vium10324g00003 1376 SUPERFAMILY L domain-like 24 239 - -
Vium10324g00003 1376 SMART LRR_typ_2 786 809 IPR003591 -
Vium10324g00003 1376 SMART LRR_typ_2 906 929 IPR003591 -
Vium10324g00003 1376 SMART LRR_typ_2 142 166 IPR003591 -
Vium10324g00003 1376 SMART LRR_typ_2 810 834 IPR003591 -
Vium10324g00003 1376 SMART LRR_typ_2 94 118 IPR003591 -
Vium10324g00003 1376 SMART LRR_typ_2 858 882 IPR003591 -
Vium10324g00003 1376 SMART LRR_typ_2 190 213 IPR003591 -
Vium10324g00003 1376 SMART LRR_typ_2 214 237 IPR003591 -
Vium10324g00003 1376 FunFam Leucine-rich repeat receptor-like kinase 29 136 - -
Vium10324g00003 1376 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 768 1370 - -
Vium10324g00003 1376 Pfam Leucine rich repeat N-terminal domain 720 760 IPR013210 -
Vium10324g00003 1376 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Vium10324g00003 1376 Gene3D Ribonuclease Inhibitor 835 946 IPR032675 -
Vium10324g00003 1376 FunFam Protein NSP-INTERACTING KINASE 2 383 490 - -
Vium10324g00003 1376 Gene3D Transferase(Phosphotransferase) domain 1 491 688 - -
Vium10324g00003 1376 Gene3D Transferase(Phosphotransferase) domain 1 1183 1375 - -
Vium10324g00003 1376 Pfam Leucine rich repeat 861 919 IPR001611 GO:0005515
Vium10324g00003 1376 Pfam Leucine rich repeat 169 227 IPR001611 GO:0005515
Vium10324g00003 1376 ProSiteProfiles Protein kinase domain profile. 1104 1376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10324g00003 1376 SUPERFAMILY L domain-like 716 931 - -
Vium10324g00003 1376 SUPERFAMILY Protein kinase-like (PK-like) 1083 1369 IPR011009 -
Vium10324g00003 1376 ProSiteProfiles Protein kinase domain profile. 412 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10324g00003 1376 Gene3D Ribonuclease Inhibitor 140 263 IPR032675 -
Vium10324g00003 1376 FunFam Protein NSP-INTERACTING KINASE 2 491 681 - -
Vium10324g00003 1376 FunFam Protein NSP-INTERACTING KINASE 2 1075 1182 - -
Vium10324g00003 1376 Pfam Protein tyrosine and serine/threonine kinase 416 677 IPR001245 GO:0004672|GO:0006468
Vium10324g00003 1376 Pfam Protein tyrosine and serine/threonine kinase 1108 1369 IPR001245 GO:0004672|GO:0006468
Vium10324g00003 1376 SUPERFAMILY Protein kinase-like (PK-like) 391 680 IPR011009 -
Vium10324g00003 1376 FunFam Protein NSP-INTERACTING KINASE 2 832 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10324g00003 Vium-Chr10324 27280 36984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10324g00003 5 525 Miscellaneous Gene Families AT4G22730 56.285 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vium10324g00003 PK_Tyr_Ser-Thr 9.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10324g00003 - - vum:124819657 2687.14