Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10324g00001 ATGGCTTCCCTTGCAGCTTCCACCGCTGCTGCATCCCTTGGCATGTCAGAAATGCTTGGAAACCCCATCAACCTCAGTGGTGCCACAAGGCCTGCTCCATCTCCCTCTAGCCCTGCCTCCTTCAAGACTGTGGCTCTTTTCTCCAAAAAGAAGGCAGCACCAACTCCCCCCAAAAAAGCTGCTGCTGTTTCTCCTGCCAATGATGAACTTGCCAAGTGGTATGGTCCTGATAGAAGGATTTTCTTGCCAGAGGGTCTCTTGGACCGATCTGAGATCCCAGAGTACTTGACTGGAGAAGTCCCCGGAGATTATGGTTATGACCCTTTTGGTCTCAGCAAGAAGCCAGAGGACTTTGCCAAATATCAGGCATTTGAGTTGATTCACGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATATGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGACAGGAGCTCTGCTTCTTGATGGGGGTACGTTGAACTACTTTGGGAAACCCATTCCCATCAATCTTATTGTGGCTGTCATTGCTGAGATAGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTACTAATGGCCTGAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGACTTGCAAATGATCCAGATCAGGCTGCACTGCTAAAGGTGAAGGAAATCAAGAATGGTAGACTTGCTATGTTTGCCATGCTTGGTTTCTACTTCCAAGCCTATGTGACTGGAGAAGGCCCTGTTGAGAACCTTGCAAAGCATCTCAGCGACCCTTTTGGCAACAACTTGCTCACAGTCATTGCTGGAAATGCTGAAAGAGCTCCAACTCTCTAA 876 0.484 MASLAASTAAASLGMSEMLGNPINLSGATRPAPSPSSPASFKTVALFSKKKAAPTPPKKAAAVSPANDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRITNGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGNAERAPTL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10324g00001 291 Gene3D Chlorophyll a/b binding protein domain 80 291 - -
Vium10324g00001 291 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 36 280 IPR001344 GO:0009765|GO:0016020
Vium10324g00001 291 FunFam Chlorophyll a-b binding protein, chloroplastic 80 291 - -
Vium10324g00001 291 Pfam Chlorophyll A-B binding protein 93 254 IPR022796 -
Vium10324g00001 291 SUPERFAMILY Chlorophyll a-b binding protein 72 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10324g00001 Vium-Chr10324 279 2750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10324g00001 11 291 Chloroplast and Mitochondria Gene Families AT4G10340 82.979 1.09e-154 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10324g00001 K08916 - gmx:100806585 542.732