Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10320g00001 ATGGCTTCTGGTTCCTCATCCACACCCTTTTTGGGAATCAGACAAGAAAATCAAACTCAGGTTTCACAACAGCACCAATCCTCCACGGCTGCTTCCTCATCTACTACTACTACTACTACTTCTACTACTACCACTCCAACCACAATGCCTCAGAAGAAAAGAAGGAATCAACCAGGAACACCATGCAAATTTTCTTTTTCTCTCCTGACAAACAATCATGTCAAGGAAACCCTAAATCCTGCTATTACATATAGGACTAGGAGTTTCTTTAACTCAGTAAAGGCTGATTACAATGATCCAGATGCCGAGGTGATAGCACTGTCTCCGAAGACTCTAATGGCAACAAACAGGTTTATATGCGAAGTGTGCAATAAAGGGTTTCAAAGGGAGCAAAATCTACAGCTTCACAGAAGAGGACACAATCTGCCATGGAAGCTGAAGCAGAAGAGCAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCATCATGACCCTTCGAGGGCTCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAACACGGTGAGAAGAAATGGAAGTGTGACAAATGCTCCAAAAAATATGCTGTTCAATCAGATTGGAAGGCTCACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGTAGCAGCCAGGCCTTGCATTGCATCATTGCATGCAACCCAAGGCAGCTAAACACAGCAAAGGTGGGTTCAGAAACCTTTTATGCCCTTTCCATGTCAATGTCCCTAAACGGTAATGACACAGTACACTCTGCCCCTACTGAATTTCAGACAACAGTCCCTTCCCCAATCACTCCTCAGTGGGGCTTGGTGATTAGTGAAAGTTTGTCTGGGAGTGAGTCAGAATATGCGAAATAA 927 0.4466 MASGSSSTPFLGIRQENQTQVSQQHQSSTAASSSTTTTTTSTTTTPTTMPQKKRRNQPGTPCKFSFSLLTNNHVKETLNPAITYRTRSFFNSVKADYNDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSSSSQALHCIIACNPRQLNTAKVGSETFYALSMSMSLNGNDTVHSAPTEFQTTVPSPITPQWGLVISESLSGSESEYAK 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10320g00001 308 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 252 IPR031140 -
Vium10320g00001 308 Gene3D Classic Zinc Finger 172 250 - -
Vium10320g00001 308 SMART c2h2final6 118 140 IPR013087 -
Vium10320g00001 308 SMART c2h2final6 194 214 IPR013087 -
Vium10320g00001 308 SMART c2h2final6 159 189 IPR013087 -
Vium10320g00001 308 MobiDBLite consensus disorder prediction 1 63 - -
Vium10320g00001 308 Pfam Zinc-finger double-stranded RNA-binding 118 140 IPR022755 -
Vium10320g00001 308 Gene3D Classic Zinc Finger 96 166 - -
Vium10320g00001 308 SUPERFAMILY beta-beta-alpha zinc fingers 117 214 IPR036236 -
Vium10320g00001 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 140 IPR013087 -
Vium10320g00001 308 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Vium10320g00001 308 FunFam protein indeterminate-domain 12-like 97 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10320g00001 Vium-Chr10320 9913 11767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10320g00001 10 230 IDZ Gene Family AT2G02070 63.348 5.96e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium10320g00001 zf-C2H2_jaz 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10320g00001 K25870 - gmx:102663407 325.479