Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1031g00005 ATGGCTGGTGACATGCACCAACCACAATCCTCTCTTGGCAGAACCTTCCCTCCTAATTCAGAAGATTTCTCAACCTTCTTCAACCAACTCCTCCACAACCCTCCCACACCAGGAATGGACCCTAATCATTCTGCTTCTGATTTCACCCCAAACAACCTCAACAACAACAACCCTGTTCCTTCCTCTCCCTCAACTTTTCATTTCTCTCACCCCCATCACTACATCCCTGCAACTGATGCCAACACCTTCAAACAACACAACAATAATCACAACCCTGATTTCACTTCTTCTTCTGAGAAGAGTGTGGAGGCAACGAAACCTGTCCCACCACCACGTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGAAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCGAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGACGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTGCCAGGAGAACTAAGACCTGTGATAATGCCTCAGACTGGGTTGAACCTTGATGAGAGTGATGGACTTCAGAATTCTACTAGTGCAATTGCATCATCTTCAAATGAAGAAAGCTTGGTTCGGCATGCTTTTAGTTTTCCAAAGCAATGCAGCATCTCAGATCAGTCCCATGTTGTGCCCTCAGTGACAAGTTTAGCCACCTCCAATGCCCCAACCACTTTTCATCCTTCTATTAAGGATACACTCTACAACAACATGCCCCAATTGTTTATGGATGCACCAAAGATTGGAAAGGACCCTTCTTCAGACTTGTCTTGA 879 0.4357 MAGDMHQPQSSLGRTFPPNSEDFSTFFNQLLHNPPTPGMDPNHSASDFTPNNLNNNNPVPSSPSTFHFSHPHHYIPATDANTFKQHNNNHNPDFTSSSEKSVEATKPVPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMTRNGLSLHPMSLPGELRPVIMPQTGLNLDESDGLQNSTSAIASSSNEESLVRHAFSFPKQCSISDQSHVVPSVTSLATSNAPTTFHPSIKDTLYNNMPQLFMDAPKIGKDPSSDLS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1031g00005 292 Gene3D - 114 178 IPR036638 GO:0046983
Vium1031g00005 292 MobiDBLite consensus disorder prediction 80 103 - -
Vium1031g00005 292 Coils Coil 158 178 - -
Vium1031g00005 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 179 IPR036638 GO:0046983
Vium1031g00005 292 MobiDBLite consensus disorder prediction 117 131 - -
Vium1031g00005 292 MobiDBLite consensus disorder prediction 39 68 - -
Vium1031g00005 292 SMART finulus 125 174 IPR011598 GO:0046983
Vium1031g00005 292 MobiDBLite consensus disorder prediction 8 32 - -
Vium1031g00005 292 CDD bHLH_AtPIF_like 119 181 IPR047265 -
Vium1031g00005 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 168 IPR011598 GO:0046983
Vium1031g00005 292 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 18 272 IPR031066 -
Vium1031g00005 292 Pfam Helix-loop-helix DNA-binding domain 123 169 IPR011598 GO:0046983
Vium1031g00005 292 FunFam Basic helix-loop-helix transcription factor 114 177 - -
Vium1031g00005 292 MobiDBLite consensus disorder prediction 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1031g00005 Vium-Chr1031 30717 34285 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1031g00005 118 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 67.568 2.97e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium1031g00005 HLH 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1031g00005 - - gmx:100785332 401.364