Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1031g00004 ATGGCTGGTGACATGCACCAACCACAATCCTCTCTTGGCAGAACCTTCCCTCCTAATTCAGAAGATTTCTCAACCTTCTTCAACCAACTCCTCCACAACCCTCCCACACCAGGAATGGACCCTAATCATTCTGCTTCTGATTTCACCCCAAACAACCTCAACAACAACAACCCTGTTCCTTCCTCTCCCTCAACTTTTCATTTCTCTCACCCCCATCACTACATCCCTGCAACTGATGCCAACACCTTCAAACAACACAACAATAATCACAACCCTGATTTCACTTCTTCTTCTGAGAGTGTGGAGGCAACGAAACCTGTCCCACCACCACGTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGAAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCGAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGACGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTGCCAGGAGAACTAAGACCTGTGATAATGCCTCAGACTGGGTTGAACCTTGATGAGAGTGATGGACTTCAGAATTCTACTAGTGCAATTGCATCATCTTCAAATGAAGAAAGCTTGGTTCGGCATGCTTTTAGTTTTCCAAAGCAATGCAGCATCTCAGATCAGTCCCATGTTGTGCCCTCAGTGACAAGTTTAGCCACCTCCAATGCCCCAACCACTTTTCATCCTTCTATTAAGGATACACTCTACAACAACATGCCCCAATTGTTTATGGATGCACCAAAGATTGGAAAGGACCCTTCTTCAGACTTGTCTTGA 876 0.4361 MAGDMHQPQSSLGRTFPPNSEDFSTFFNQLLHNPPTPGMDPNHSASDFTPNNLNNNNPVPSSPSTFHFSHPHHYIPATDANTFKQHNNNHNPDFTSSSESVEATKPVPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMTRNGLSLHPMSLPGELRPVIMPQTGLNLDESDGLQNSTSAIASSSNEESLVRHAFSFPKQCSISDQSHVVPSVTSLATSNAPTTFHPSIKDTLYNNMPQLFMDAPKIGKDPSSDLS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1031g00004 291 MobiDBLite consensus disorder prediction 1 133 - -
Vium1031g00004 291 MobiDBLite consensus disorder prediction 80 103 - -
Vium1031g00004 291 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 18 271 IPR031066 -
Vium1031g00004 291 MobiDBLite consensus disorder prediction 39 68 - -
Vium1031g00004 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 167 IPR011598 GO:0046983
Vium1031g00004 291 Pfam Helix-loop-helix DNA-binding domain 122 168 IPR011598 GO:0046983
Vium1031g00004 291 SMART finulus 124 173 IPR011598 GO:0046983
Vium1031g00004 291 MobiDBLite consensus disorder prediction 8 32 - -
Vium1031g00004 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 178 IPR036638 GO:0046983
Vium1031g00004 291 FunFam Basic helix-loop-helix transcription factor 113 176 - -
Vium1031g00004 291 Gene3D - 113 177 IPR036638 GO:0046983
Vium1031g00004 291 MobiDBLite consensus disorder prediction 116 133 - -
Vium1031g00004 291 Coils Coil 157 177 - -
Vium1031g00004 291 CDD bHLH_AtPIF_like 118 180 IPR047265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1031g00004 Vium-Chr1031 30717 34285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1031g00004 117 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 67.568 3.31e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium1031g00004 HLH 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1031g00004 - - gmx:100785332 397.897