Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1031g00003 ATGGCTGGTGACATGCACCAACCACAATCCTCTCTTGGCAGAACCTTCCCTCCTAATTCAGAAGATTTCTCAACCTTCTTCAACCAACTCCTCCACAACCCTCCCACACCAGGAATGGACCCTAATCATTCTGCTTCTGATTTCACCCCAAACAACCTCAACAACAACAACCCTGTTCCTTCCTCTCCCTCAACTTTTCATTTCTCTCACCCCCATCACTACATCCCTGCAACTGATGCCAACACCTTCAAACAACACAACAATAATCACAACCCTGATTTCACTTCTTCTTCTGAGAGAAGAAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCGAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGACGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTGCCAGGAGAACTAAGACCTGTGATAATGCCTCAGACTGGGTTGAACCTTGATGAGAGTGATGGACTTCAGAATTCTACTAGTGCAATTGCATCATCTTCAAATGAAGAAAGCTTGGTTCGGCATGCTTTTAGTTTTCCAAAGCAATGCAGCATCTCAGATCAGTCCCATGTTGTGCCCTCAGTGACAAGTTTAGCCACCTCCAATGCCCCAACCACTTTTCATCCTTCTATTAAGGATACACTCTACAACAACATGCCCCAATTGTTTATGGATGCACCAAAGATTGGAAAGGACCCTTCTTCAGACTTGTCTTGA 789 0.4309 MAGDMHQPQSSLGRTFPPNSEDFSTFFNQLLHNPPTPGMDPNHSASDFTPNNLNNNNPVPSSPSTFHFSHPHHYIPATDANTFKQHNNNHNPDFTSSSERRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMTRNGLSLHPMSLPGELRPVIMPQTGLNLDESDGLQNSTSAIASSSNEESLVRHAFSFPKQCSISDQSHVVPSVTSLATSNAPTTFHPSIKDTLYNNMPQLFMDAPKIGKDPSSDLS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1031g00003 262 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 90 242 IPR031066 -
Vium1031g00003 262 SMART finulus 96 144 IPR011598 GO:0046983
Vium1031g00003 262 MobiDBLite consensus disorder prediction 1 101 - -
Vium1031g00003 262 MobiDBLite consensus disorder prediction 8 32 - -
Vium1031g00003 262 CDD bHLH_AtPIF_like 105 151 IPR047265 -
Vium1031g00003 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 89 138 IPR011598 GO:0046983
Vium1031g00003 262 Gene3D - 84 148 IPR036638 GO:0046983
Vium1031g00003 262 Pfam Helix-loop-helix DNA-binding domain 100 139 IPR011598 GO:0046983
Vium1031g00003 262 Coils Coil 128 148 - -
Vium1031g00003 262 MobiDBLite consensus disorder prediction 39 68 - -
Vium1031g00003 262 MobiDBLite consensus disorder prediction 80 94 - -
Vium1031g00003 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 149 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1031g00003 Vium-Chr1031 30717 34285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1031g00003 97 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 64.706 1.23e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium1031g00003 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1031g00003 - - gmx:100785332 344.739