Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10319g00007 ATGGACGTAGAGAACAAAGGAACCAGACTCAAACCTACGTTTCTATTATTCCTTGTCATTCTTCACCTTTTCTTTTCCACCCTAGCCAAATCTTCTTTCACACCTCATGTTAACTATCTCCTTGATTGTGGCTCCTCCCACCCCACTCAGCTCACAGATGGAAGAACCTTCAAATCTGATCGTGAAACCACTTCTCTCCTAGCCACAGCCGAAGATGTGCAAATATCACTTTACTCAAATCTCTCCCCTTCTGTTCCTTCTTCATTGCTTCCTTTGTATCAAACTGCAAGGGTTTTTCAAGAGGAATCCACCTACTCCTTTTACATATCCAAAACTGGTAGACTTTGGGTTCGCCTTTACTTCTTCCCTCTCTCTAACCCTTCCTATAACCTAACAACTGCTGTCTTCTCTGTCCAAACTAATCACCATGTGCTCCTGCACGAGTTCTCCGCCAGGAACAATGACTCACCTGTTTTCAAGGAATACCTTGTTAACGTTTCTGATAGTAGATTTTCCCTCAAATTCAAGCCCAAGAAAGGCTCCTTTGCGTTCATCAATGCAATTGAGGTTGTCTCAGTCCCCGACGCTCTTATTTCGGATTCAGCAACTGCACTTTCCCCACTTGGTGAATTCAAAGGCTTGTTCAATTCTGCTCTTGAAGTATCCTACAGAATAAACGTTGGTGGTCCCACCATAACTCCTGACGACGACACTTTGGCAAGAACATGGGAAACTGATGGTTCATACAACATCTTCCCACAGGGTTCTGAGACTATTTCTGTCTCCAAAAAAGGCATAAAGTATCCTGATACTAGGGTTACACCTACGATTGCTCCCAACTTGGTTTATGCAAGTGCTGTACACGTGAAGAACGCTACATTCATGCTACCGAATTTCAATCTCAGTTGGATGGTGAACGTGGATAGGAGCTACTCTTATTTGATAAGAATGCATTTCTGTGACATTTTGAGCAGGAGTCTTAATCAGTTATACTTTAATGTGTACATCAACGGGATTGAGGGTGTATCAGCTTTGAATCTATCATCGCAAACCAAAGCTCTAGCCACTGCTTTTTACCAGGACTTTGTGTTAAATGCACGGGATATCACAAACGGTTCCATTTTGGTTCAGGTGGGACCGACCAATCTCCCACGTGGCCCGACCGATGCAATTCTGAATGGATTTGAGGTGATGAAGATTAGCAACATCGCAGACAGCTTGGACGGTTTATACTCTGTTGATGGGAAATACAAAGGGCCATGTTCAACAACCATGGAAATGAAAATTTTGGCTTATGTTGGAATTGCATTGGCTGTGACAACAATTCTGTTGCTAGTAATAACTTGCATAAGGTGGAAAAAGAGGCCTCAAGGTAGGGAAAATCATAACAGGTTCTCATCAAGCCCCCTTCCTGTCCATTCCCCTATATCGTGTTCAAGCAAAAGCAGTTGTCGAGGGTCAACAGCATCCAGTTCCCGCAAGAGCAATAAACACGATCATAGTGTCACCCCACAAGGGCCCAAAAGGTTCTTCCCCTTTAGTGAAATGCGACAAGCCACCAATAATTTCGAAGAGAAAAGAGTAATTGGTGTTGGAGGCTTCGGGAAAGTGTATCTTGGAACGTTGAAAGATGGGACAAAGGTTGCCATAAAACGAGGAAGTGGTAATTCAGAGCAAGGCATCAATGAATTCAGAACAGAACTGGAAATGCTGTCAAAGCTACGCCATCGCCACCTTGTCTCATTGATAGGTTTCTGTGATGAAAACTCAGAGATGATTCTTGTGTATGAGTACATGGCTAATGGCCCTTTTCGTTCTCACATCTACGGGTTCGACCTGCCTTGTTTGTCATGGCAAAAGAGGCTTGAAATATGCATTGGTGCAGCTCGTGGGTTGTACTATCTCCACACTGGCGCAGCTCAAAGCATCACACACCGTGATGTGAAGACAACAAACATACTCCTAGATGAGAATTACGTGGCCAAGGTTTCTGACTTTGGTTTGTCAAAGGTTGTCCCAGATGAAGCTCAAGTTAGCACAGCAGTGAAGGGTAGTTTTGGGTACCTTGACCCTGAGTACTAAAGGAGTCAACAACTAACTCAGAAATCTGATATATACTCTTTTGGGGTAGTCCTATTTGAGGTATTATGTGCTAGGCCAGTTATTTGCCCAACACGTCCAACAGAAGAGATTAACTTGGCTGAATGGGCAAAGAAACAGAATAGAAGAGGATTGGTGAATGAAATAATTGATCCACGTATTGGTGTTACTATGAATCCTCAATCACTCAGTGTTTTTGTGGAAATTGCTGAGAGATGTTTAGCAGACTGTGGTGTTGATAGGCCTAGCATGGGGGATGTGTTGTGGCATTTGGAATACGCGTTGCGCCTACAAGAAGCTGCCTCACGGATTGATGAAGCTGAAGATAAAAGGGCAATATAG 2442 0.4353 MDVENKGTRLKPTFLLFLVILHLFFSTLAKSSFTPHVNYLLDCGSSHPTQLTDGRTFKSDRETTSLLATAEDVQISLYSNLSPSVPSSLLPLYQTARVFQEESTYSFYISKTGRLWVRLYFFPLSNPSYNLTTAVFSVQTNHHVLLHEFSARNNDSPVFKEYLVNVSDSRFSLKFKPKKGSFAFINAIEVVSVPDALISDSATALSPLGEFKGLFNSALEVSYRINVGGPTITPDDDTLARTWETDGSYNIFPQGSETISVSKKGIKYPDTRVTPTIAPNLVYASAVHVKNATFMLPNFNLSWMVNVDRSYSYLIRMHFCDILSRSLNQLYFNVYINGIEGVSALNLSSQTKALATAFYQDFVLNARDITNGSILVQVGPTNLPRGPTDAILNGFEVMKISNIADSLDGLYSVDGKYKGPCSTTMEMKILAYVGIALAVTTILLLVITCIRWKKRPQGRENHNRFSSSPLPVHSPISCSSKSSCRGSTASSSRKSNKHDHSVTPQGPKRFFPFSEMRQATNNFEEKRVIGVGGFGKVYLGTLKDGTKVAIKRGSGNSEQGINEFRTELEMLSKLRHRHLVSLIGFCDENSEMILVYEYMANGPFRSHIYGFDLPCLSWQKRLEICIGAARGLYYLHTGAAQSITHRDVKTTNILLDENYVAKVSDFGLSKVVPDEAQVSTAVKGSFGYLDPEYXRSQQLTQKSDIYSFGVVLFEVLCARPVICPTRPTEEINLAEWAKKQNRRGLVNEIIDPRIGVTMNPQSLSVFVEIAERCLADCGVDRPSMGDVLWHLEYALRLQEAASRIDEAEDKRAI 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10319g00007 813 FunFam receptor-like protein kinase FERONIA 485 598 - -
Vium10319g00007 813 Pfam Malectin-like domain 41 400 IPR024788 -
Vium10319g00007 813 Gene3D - 218 401 - -
Vium10319g00007 813 Gene3D - 34 193 - -
Vium10319g00007 813 FunFam Receptor-like protein kinase FERONIA 599 812 - -
Vium10319g00007 813 Gene3D Transferase(Phosphotransferase) domain 1 599 812 - -
Vium10319g00007 813 MobiDBLite consensus disorder prediction 476 509 - -
Vium10319g00007 813 ProSiteProfiles Protein kinase domain profile. 523 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10319g00007 813 FunFam Putative receptor-like protein kinase 38 194 - -
Vium10319g00007 813 PANTHER OS07G0166700 PROTEIN 509 798 IPR045272 GO:0004714|GO:0006468
Vium10319g00007 813 SUPERFAMILY Protein kinase-like (PK-like) 498 793 IPR011009 -
Vium10319g00007 813 Gene3D Phosphorylase Kinase; domain 1 483 598 - -
Vium10319g00007 813 CDD STKc_IRAK 529 792 - -
Vium10319g00007 813 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Vium10319g00007 813 Pfam Protein tyrosine and serine/threonine kinase 525 736 IPR001245 GO:0004672|GO:0006468
Vium10319g00007 813 Coils Coil 790 813 - -
Vium10319g00007 813 FunFam Receptor-like protein kinase FERONIA 218 402 - -
Vium10319g00007 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Vium10319g00007 813 SMART serkin_6 523 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10319g00007 813 MobiDBLite consensus disorder prediction 476 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10319g00007 Vium-Chr10319 97693 101062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10319g00007 29 813 Receptor kinase-like Gene Family AT5G61350 59.000 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium10319g00007 Malectin_like 4.4e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10319g00007 - - gmx:100814982 1245.34