Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10319g00004 ATGGCGCTGTTCAGAAGGTTCTTCTACCGGAAGCCGCCGGATCGGCTTCTGGAGATTTCCGAGAGAGTTTATGTTTTTGATTGTTGCTTCTCCCCGGATGTCTTGGAAGAAGAAGAATATAGAGTTTATATGGGGGGGATTGTGGCTCAGCTACAGGATCACTTTCCAGATGCTTCTTTCATGGTATTCAACTTCAGAGAAGGGGAGAGACGCAGCCAAATCTCAGACATATTTTCTCAGTATGACATGACAGTTATGGAGTACCCTCGGCAGTATGAGGGTTGTCCTGTTCTGCCGTTAGAGATGATCCATCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCTCTGGAGGGGCAACAAAATGTGCTTTTGATGCATTGTGAAAGGGGAGGTTGGCCCGTGCTGGCATTTATGCTAGCAGGTCTTCTGTTATACAGGAAACAGTACAGTGGGGAGCAAAAGACTCTTGAAATGGTCTACAAGCAAGCTCCAAGGGAACTACTACACATATTGTCTCCTTTGAATCCACAGCCTTCGCATTTAAGATATCTTCAGTATATTTCCAGGAGAAGTTTGGGAGCTGAGTGGCCACCATCGGAAACACCCTTATACTTGGATTGTCTGATTCTTAGAGTCCTTCCAATATTTGACGATGGAAAAGGTTGCAGGCCCGTTGTACGTGTTTATGGTCAAGACCCTTCAATTACTGCCACTAGAAGTTCAAAGCTTCTTTTTTCAACTTCACAATCCAAAAAACATGTTCGCCACTACCTACAGGCAGAGTGTATGCTCGTGAAAATTGACTTGCGTTGTCGTGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAAGTGATGATTTTGTTCACGAGGAATTGATGTTTAGAGTTATGTTTCATACTGCATTTGTGCGGTCAAATATTTTGATGCTGAGCCGTGATGAAATTGATATTTTGTGGGAGGCGAAGGACCTATTTCCCAAGGACTTCAAAGCAGAGGTGCTTTTTTTGGACGCTGATGCTGTTATACCTGATCTAACCACAGTCACGGTGAGTGAAGATGCAAATGAGATTGAGAGTGCTGAGACAGAAAGTGCTTCACCTGATGAGTTCTATGAAGTAGAAGAAATCTTCAGCAGTGTAATTGATGCACAAGAAGGTAAGACAGAGTATGATTCTCAGGCTTTCCATGAAAATGCTGTGAATGATGAAACTCATAAGGGGGTCTGGAGGCAGAAGTCTGATCCTCATAGTTTTGAGGATTGTCCGCCAGATGACAAGATCGCCAAGCAGGTTTACAAGATGGATCCTGGTATTAATACTGTGAAAGACATCTCTATTGATGATGCTCACTATAAATTTGATGGGAGCATAGATTCAGATCCTCATGCAGTGAAGGACATTGCTGTCGATGATGGAGAAATTAAGTCAACTTCCATTGCAGTTATTTCTGATATGATGAAACCTCCTCTGGAAACAAAGGAAGTTACCATGCATGTGCAGCAGGAATTTGCAGTCATTGAAAATGAATATGATGAAGATAAGGAGGTAACAGAAAAGGAGCTAGACTCCAAGGCTGGGAACCAGATGCCTGATTTGACTGAACAAAAATCTGGTAAAGTACTTCCATCTACTGCCAAGAAACAACCTCCATCCAACTCGAAGCCAGTTGGAGATACAGTTGCAGCAAAGCAAAAGATTAAACAGCAAGAAACCCATGGTTTTCAGGCAAAACAAGCTAAGCCAAATGCCGTAACTAGATGGATTCCTTCTAACAAGGGTTCTTATACAAATTCAATGCACGTCTATTATCCGCCATCAAGGAATAATAGTGCACCAGCTGCACTGACAAATTTGTCTTCCACAAAAGAGAAAATTGAAGATTCCAAAACAAGATCTTTATCTGCTCCTGTTGTTTCTGCAGTTGTTGCTTCTATTGACAAAACAAATGACCTAAAAAGCCGGAAAGTGGTCACTTCAAAATCTTCTGGCTATATAGCAACAGAAATAGATGAAAAAGGTCTACCGTCACCATTGTCATCAATTAAAGAGACATCTTTTCAGTCAGATACTCCAGCGCAAGAGCAGAGCTCAGAACAACTGCTACAGCCTCCCCCACCACCTCCCCCTCCCCCTCCTGCTCACAGTAGAGTCTCTTCTCAAGTTTTTGAATCCTCATCATTAAAGGATGATGTATCAGCTCAAGGCTCTCCATCTTCTTTGGGTGGAAAAGGGTCCCTCATGCCACCACCACCACCTCCTCCACCGCCACCATTTCAACCTTCAACTTTAACAACATTTATGAGACCACCTGAAACTTCTCTTCCTTTCCCTCCACCCCCACCACCACCCCCGCCCCCTTTTTTTGGGCAAAATGTAGGGAGCTCAGTACCTTTTCCATCCCCTAGGAAATCTGTGGCTTCATCAATGGTTGGAGAGACTAGTGTATCTTTAACAGTTTCTACAACCCCTCTTCCATTTACAAGCACTGCCGTTACACCGGATGTTTCTCAAGTGGGTACTGCAGTGATCCCTTCACAGCCTCCTCCACCGCCACCACCTCCAAGGTATGAAGTTTCATCTGTTCCTCCTTTGACACCACTAGCATCACCTCTTCCAAAAAATGAAATTCCATCGGTTCCCCCTCCTCCCATGTTTCCTACAGCTTCAACAAACAGGGCTCCACCCCCTCCTCCCCCAACACCCCCATTTGCATTACATAAAGGTTCACCTCCACCAGCAACCCCACCTCCAACTCAACCCCTGTCTCCGCCTCCTCCTCCCCCTCCCCTAGCCAATTCACATATATATTCAGCTACACCACCTATAGCTAATTCTCATGTATATTCAACTACACTACCTATACCTCCGCCACCACCTCCCCCTCCTTTTGGTAAAGCTTCATTACCTCCCTCTCCACCTCCTTTCAATAGTCCTCTTCCACCACCACCACCTCCACCCACACCTCCTTCCCCACCTCTTCCTCTATCAAGTGTGGCCTCTCCTCCACCTCCTCCAATGTATAAAGCCGCACCTCCCCCACCACCACCTCTTCCTCCATCAAGTAGAGCCTCACCTCCGCCACCGCCACCACCACCTCTTCCTCCATCAAATGGAGCCCCACCTCCACCTCCACCACCACCTCTTCCTCCATCAAGTGGAGCCCCACCACCCCCTCCACCTCCAATGTACGGAGTACCACCTCCATCAATGTATGGAACACCACCTCCTCCTCTAGGTGGTCGAGGACCACCTCCTCCACCTCCTCCTCCAGGCGGTCGAGGACCTCCTCCTCCACCTCCCCCAGGTGTTCCTGGTGCTCCTACACCTCCTGGGGGTGGACCTCCGCCACCTCCGCCCTTTGGTGCAAAAGGTGCAAATGTTGGAGTTGATCCAAGAGGGAGAGGACGTGGGTATGCGCGCCCTACAGGGGCTGCACCCCGTAAATCCTCTTTAAAGCCTTTACATTGGAGCAAGGTTACAAGGGCACTACAAGGAAGTTTATGGGAAGAATTACAAAGACATGGAGAACCACAAATTGCACCAGAGTTCGATTTTTCAGAGCTAGAGAAGCTTTTCTCCTTAAATGTTCCAAAACCTGCTGATGCTGGTGGAAAATCTGGAGGGAAGGGCAAGTCTGCTGGATCTAAAACTGACAGAGTCACCTTGGTTGATCTAAGGAGGGCTAATAATACTGAAATTATGCTCACTAAGGTTAAGATGCCACTTCCCGATATGATGGCTGCAGTACTGGCTTTGGACGAGTCAGTATTAGATGTTGATCAAGTGGAAAATCTTATTAAGTTTTGTCCTACAAAAGAGGAGATGGATCTTATAAAGGCATACACCGGTGACAAGGAACTTTTGGGGAAGTGTGAACAGTTTTTTATAGAGTTGATGAAGGTGCCAAGGGTGGAGTCAAAATTAAGAGTATTTGCGTTCAAGATTCAGTTTGGTGCCCAGCTTACGGAGTTTAAGAAGAGTTTAAACACTGTTAACTCTGCCTGTGAAGAGGTCCGACATTCTGCTAAACTGAAGGAGATAATGAAGAAAATACTTTATTTGGGTAATACATTGAATCAAGGAACAGCAAGGGGATCTGCAGTTGGATTCAAGTTAGATAGCCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAGAATGACACTGATGCATTATCTCTGCAAGGTCATAGCTGAAAAGTCACCCAAACTCCTTGATTTCCACCTAGACCTTGTTAGCCTGGAAGATTCCACTAAGATACAATTGAAGTCATTAGCAGAAGAGATGCAGGCAATCATCAAGGGACTAGAAAAAGTTAAACAAGAATTTGCTGCATCTGCGAATGATGGACCTGTTTCTGCAGTTTTCCATGAGAAATTGAAAGAATTTATTGGTGTATCTGAGTCAGAGGTGGCATCTCTAACAAACCTATATTCTGTAGTGGGTAGAAATGCTGATGCACTTGCCCTATATTTTGGTGAGGATCCTGCTCGTTGCCCTTTTGAGCAAGTTACTACAACCCTGCTAAATTTTATAAGGTTGTTTCGGAAAGCACATGAAGAAAATTGCAAACAAGCAGAGTTAGAGAAGAAGAAAGCTGAGAAGGAGGCTGAAATGGAAAAGGCTAAGGGCGTTAACTTGACAAAAAAGGGTGCAAAAGATAGTTGA 4674 0.4523 MALFRRFFYRKPPDRLLEISERVYVFDCCFSPDVLEEEEYRVYMGGIVAQLQDHFPDASFMVFNFREGERRSQISDIFSQYDMTVMEYPRQYEGCPVLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPRELLHILSPLNPQPSHLRYLQYISRRSLGAEWPPSETPLYLDCLILRVLPIFDDGKGCRPVVRVYGQDPSITATRSSKLLFSTSQSKKHVRHYLQAECMLVKIDLRCRVQGDVVLECIHLSDDFVHEELMFRVMFHTAFVRSNILMLSRDEIDILWEAKDLFPKDFKAEVLFLDADAVIPDLTTVTVSEDANEIESAETESASPDEFYEVEEIFSSVIDAQEGKTEYDSQAFHENAVNDETHKGVWRQKSDPHSFEDCPPDDKIAKQVYKMDPGINTVKDISIDDAHYKFDGSIDSDPHAVKDIAVDDGEIKSTSIAVISDMMKPPLETKEVTMHVQQEFAVIENEYDEDKEVTEKELDSKAGNQMPDLTEQKSGKVLPSTAKKQPPSNSKPVGDTVAAKQKIKQQETHGFQAKQAKPNAVTRWIPSNKGSYTNSMHVYYPPSRNNSAPAALTNLSSTKEKIEDSKTRSLSAPVVSAVVASIDKTNDLKSRKVVTSKSSGYIATEIDEKGLPSPLSSIKETSFQSDTPAQEQSSEQLLQPPPPPPPPPPAHSRVSSQVFESSSLKDDVSAQGSPSSLGGKGSLMPPPPPPPPPPFQPSTLTTFMRPPETSLPFPPPPPPPPPPFFGQNVGSSVPFPSPRKSVASSMVGETSVSLTVSTTPLPFTSTAVTPDVSQVGTAVIPSQPPPPPPPPRYEVSSVPPLTPLASPLPKNEIPSVPPPPMFPTASTNRAPPPPPPTPPFALHKGSPPPATPPPTQPLSPPPPPPPLANSHIYSATPPIANSHVYSTTLPIPPPPPPPPFGKASLPPSPPPFNSPLPPPPPPPTPPSPPLPLSSVASPPPPPMYKAAPPPPPPLPPSSRASPPPPPPPPLPPSNGAPPPPPPPPLPPSSGAPPPPPPPMYGVPPPSMYGTPPPPLGGRGPPPPPPPPGGRGPPPPPPPGVPGAPTPPGGGPPPPPPFGAKGANVGVDPRGRGRGYARPTGAAPRKSSLKPLHWSKVTRALQGSLWEELQRHGEPQIAPEFDFSELEKLFSLNVPKPADAGGKSGGKGKSAGSKTDRVTLVDLRRANNTEIMLTKVKMPLPDMMAAVLALDESVLDVDQVENLIKFCPTKEEMDLIKAYTGDKELLGKCEQFFIELMKVPRVESKLRVFAFKIQFGAQLTEFKKSLNTVNSACEEVRHSAKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSRMTLMHYLCKVIAEKSPKLLDFHLDLVSLEDSTKIQLKSLAEEMQAIIKGLEKVKQEFAASANDGPVSAVFHEKLKEFIGVSESEVASLTNLYSVVGRNADALALYFGEDPARCPFEQVTTTLLNFIRLFRKAHEENCKQAELEKKKAEKEAEMEKAKGVNLTKKGAKDS 1557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10319g00004 1557 MobiDBLite consensus disorder prediction 512 526 - -
Vium10319g00004 1557 PANTHER FORMIN-J 1056 1549 - -
Vium10319g00004 1557 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1097 1537 - -
Vium10319g00004 1557 Coils Coil 1424 1444 - -
Vium10319g00004 1557 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1142 1543 IPR015425 -
Vium10319g00004 1557 MobiDBLite consensus disorder prediction 952 1123 - -
Vium10319g00004 1557 MobiDBLite consensus disorder prediction 529 562 - -
Vium10319g00004 1557 MobiDBLite consensus disorder prediction 1534 1557 - -
Vium10319g00004 1557 MobiDBLite consensus disorder prediction 838 1154 - -
Vium10319g00004 1557 SMART it6_source 642 1557 IPR015425 -
Vium10319g00004 1557 MobiDBLite consensus disorder prediction 673 806 - -
Vium10319g00004 1557 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Vium10319g00004 1557 MobiDBLite consensus disorder prediction 1198 1219 - -
Vium10319g00004 1557 MobiDBLite consensus disorder prediction 512 562 - -
Vium10319g00004 1557 MobiDBLite consensus disorder prediction 772 791 - -
Vium10319g00004 1557 MobiDBLite consensus disorder prediction 745 764 - -
Vium10319g00004 1557 MobiDBLite consensus disorder prediction 718 742 - -
Vium10319g00004 1557 Pfam Formin Homology 2 Domain 1147 1517 IPR015425 -
Vium10319g00004 1557 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Vium10319g00004 1557 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Vium10319g00004 1557 Gene3D - 205 336 - -
Vium10319g00004 1557 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Vium10319g00004 1557 Coils Coil 1518 1552 - -
Vium10319g00004 1557 MobiDBLite consensus disorder prediction 701 716 - -
Vium10319g00004 1557 MobiDBLite consensus disorder prediction 679 700 - -
Vium10319g00004 1557 MobiDBLite consensus disorder prediction 844 935 - -
Vium10319g00004 1557 CDD PTP_PTEN-like 16 190 - -
Vium10319g00004 1557 Gene3D Formin, FH2 domain 1140 1529 IPR042201 -
Vium10319g00004 1557 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Vium10319g00004 1557 SMART PTEN_C2_2 198 338 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10319g00004 Vium-Chr10319 71703 90175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10319g00004 1 640 FH2 protein (formin) Gene Family AT5G07740 60.615 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10319g00004 - - vun:114178199 1580.07