LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium10319g00003	ATGGGGTGTGTGGTGGCGAAGCAGGCTGTTTCTGTCACACCCGCGATTGAGCACTCGGTTGAGTCGGATAAGAACAGGAAGAAGAAGACTGAGTCTAGTAGGAGCGAGTTGGGCGAGTCAGGGAGAGCGAGTTCCAATGCTGGAAGTGAGTCACTGAGCTTCAGGTTGGGTAACCTGAGCAAGTACGTGGAGGGAGAGCAGGCGGCGGCAGGTTGGCCAGCGTGGCTCAGCGCCGTCGCAAGTGAGGCCATTCACGGTTGGGTTCCTCTTCGAGCTGACGCATATGAGAAACTTGAAAAGATTGGTCAGGGAACATATAGCAGTGTTTTCCGAGCAAAGGAGATTGAGACCGGAAAGATAGTAGCTTTGAAGAAGGTGAGATTTGACAATTTTGAGCCGGAGAGTGTGAGGTTTATGGCACGAGAAATAATGATTCTTAGGAGGCTTGATCATCCAAACATCATTAAACTGGAGGGCTTGATTACTTCTAGATTGTCTTGTAGCATATACCTTGTGTTTGAGTACATGGAGCATGACATCACGGGGCTCTTGTCTAGACCAGAAATCAAGTTTAGTGAATCACAGATCAAATGCTACATGAAACAATTGTTATCTGGTCTTGAGCACTGTCACTCACGGGGTGTGATGCACCGGGACATCAAAGGATCAAATCTTTTAGTGAATAATGAAGGGATATTGAAGGTGGCAGATTTTGGACTGGCAAATTTCTCCAATTCTGGGAACAAGCAGCCCCTCACTAGTCGTGTAGTCACGTTATGGTATCGTCCTCCAGAACTTTTGCTCGGTTCAACAGATTATGGTCCATCCGTGGATATTTGGAGTGTTGGCTGTGTATTTGCAGAATTACTAATTGGGAAGCCTATACTTCAGGGGAGAACCGAGGTTGAACAATTGCACAAAATTTTCAAGCTTTGTGGCTCCCCACCCGAAGAATACTGGAAAAAGACCAGACTTCCTCATGCAACATTGTTCAAGCCACAACAACCATACGATAGTTGCCTCCGACAGACATTTAAAGATTTTCACGTATCCAGTGTAAATCTTCTACAAACTCTTCTTTCTGTCGAACCAAGCAAACGTGGGACTGCCTCCTCTGCTCTCTCATTAGAGTATTTCAAAACAAAACCTTATGCATGCGACCCATCAAGCTTACCAATATACCCACCTAGCAAGGAGATTGATGCGAAACATGAAGAGGAGTCAAGAAGGAAAAAAATTGGTGGGCGAGCTGGTGTACCAGAATCAAGAAAACCATCAAGAAAGCCACTAGCACTGAGTAAATTAGCCCCAGCAGAGGATTTGACAACTCAAACTCAAACTTCCCAAAAGAATGATGATAGATGTATCCACACCCTTAAAGAAGAGAACACCCATGCAGGTGAGGGGGCACCAAAGCAGTCTGGTGGTAAACCAGACGATGATTCCCATGTGAAGAAGGCATCTCAAGTAGATATTCCCTTTCCTGGGCCATTGCAAGTTTCAAAATCAAGTGGCTTTGCATGGGCTAAAAGGCGTAGAGATGACGCTTCAATTAGAACTCACAGTCGTTCTATTTCTAGAGGGTATATCTTTAATTCATTGGAAACTTCTACACTAAATTCAAGGAATAATTCTGAATCCAGAAACTACGAAAATAATGAATTTTTCGGGACATGCACCAACTCTAGGGGCCATGACCTACTTGAAATTTCTAAGCTTGCCATGAAAAATCAATGGAGTAAGTTTGATCGTCCAGATTCATTTGATACTGAGGAGTACCATTCACAAGAACTTTCCATGGCGCTTTATAACAGGCAAGACTCATTATCCAAGAGAAGTAACCTGAGTTACCAGGATCAAGGAGAAAAGGTAGAGTTTTCAGGGCCTCTGTTATCTCAAATGCACACAGTTGATGAGCTCTTAGAAAGACATGAGCGTCATATCCGGCGTACTGTCAGAAGATCATGGTTTCAGAGAGGTAAGAAGCAAGGGAAGTAA	1998	0.4429	MGCVVAKQAVSVTPAIEHSVESDKNRKKKTESSRSELGESGRASSNAGSESLSFRLGNLSKYVEGEQAAAGWPAWLSAVASEAIHGWVPLRADAYEKLEKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSRPEIKFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGNKQPLTSRVVTLWYRPPELLLGSTDYGPSVDIWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKTRLPHATLFKPQQPYDSCLRQTFKDFHVSSVNLLQTLLSVEPSKRGTASSALSLEYFKTKPYACDPSSLPIYPPSKEIDAKHEEESRRKKIGGRAGVPESRKPSRKPLALSKLAPAEDLTTQTQTSQKNDDRCIHTLKEENTHAGEGAPKQSGGKPDDDSHVKKASQVDIPFPGPLQVSKSSGFAWAKRRRDDASIRTHSRSISRGYIFNSLETSTLNSRNNSESRNYENNEFFGTCTNSRGHDLLEISKLAMKNQWSKFDRPDSFDTEEYHSQELSMALYNRQDSLSKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKQGK	665

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium10319g00003	665	ProSiteProfiles	Protein kinase domain profile.	95	379	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium10319g00003	665	MobiDBLite	consensus disorder prediction	390	496	-	-
	Vium10319g00003	665	Pfam	Protein kinase domain	95	379	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium10319g00003	665	SMART	serkin_6	95	379	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium10319g00003	665	ProSitePatterns	Protein kinases ATP-binding region signature.	101	124	IPR017441	GO:0005524
	Vium10319g00003	665	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	215	227	IPR008271	GO:0004672\|GO:0006468
	Vium10319g00003	665	Gene3D	Transferase(Phosphotransferase) domain 1	178	418	-	-
	Vium10319g00003	665	MobiDBLite	consensus disorder prediction	398	423	-	-
	Vium10319g00003	665	PANTHER	CELL DIVISION PROTEIN KINASE	93	383	-	-
	Vium10319g00003	665	MobiDBLite	consensus disorder prediction	453	467	-	-
	Vium10319g00003	665	SUPERFAMILY	Protein kinase-like (PK-like)	88	386	IPR011009	-
	Vium10319g00003	665	FunFam	probable serine/threonine-protein kinase At1g54610	82	177	-	-
	Vium10319g00003	665	MobiDBLite	consensus disorder prediction	438	452	-	-
	Vium10319g00003	665	MobiDBLite	consensus disorder prediction	15	50	-	-
	Vium10319g00003	665	MobiDBLite	consensus disorder prediction	19	36	-	-
	Vium10319g00003	665	CDD	STKc_CDK9_like	95	379	-	-
	Vium10319g00003	665	FunFam	probable serine/threonine-protein kinase At1g54610	178	417	-	-
	Vium10319g00003	665	Gene3D	Phosphorylase Kinase; domain 1	82	177	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium10319g00003	Vium-Chr10319	23894	29939	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium10319g00003	87	439	Core Cell Cycle Gene Families	AT5G10270	49.051	4.38e-115	353

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vium10319g00003		Pkinase	1.4e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium10319g00003	-		-	gmx:100784406	1176