Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10319g00002 ATGGGGTGTGTGGTGGCGAAGCAGGCTGTTTCTGTCACACCCGCGATTGAGCACTCGGTTGAGTCGGATAAGAACAGGAAGAAGAAGACTGAGTCTAGTAGGAGCGAGTTGGGCGAGTCAGGGAGAGCGAGTTCCAATGCTGGAAGTGAGTCACTGAGCTTCAGGTTGGGTAACCTGAGCAAGTACGTGGAGGGAGAGCAGGCGGCGGCAGGTTGGCCAGCGTGGCTCAGCGCCGTCGCAAGTGAGGCCATTCACGGTTGGGTTCCTCTTCGAGCTGACGCATATGAGAAACTTGAAAAGATTGGTCAGGGAACATATAGCAGTGTTTTCCGAGCAAAGGAGATTGAGACCGGAAAGATAGTAGCTTTGAAGAAGGTGAGATTTGACAATTTTGAGCCGGAGAGTGTGAGGTTTATGGCACGAGAAATAATGATTCTTAGGAGGCTTGATCATCCAAACATCATTAAACTGGAGGGCTTGATTACTTCTAGATTGTCTTGTAGCATATACCTTGTGTTTGAGTACATGGAGCATGACATCACGGGGCTCTTGTCTAGACCAGAAATCAAGTTTAGTGAATCACAGATCAAATGCTACATGAAACAATTGTTATCTGGTCTTGAGCACTGTCACTCACGGGGTGTGATGCACCGGGACATCAAAGGATCAAATCTTTTAGTGAATAATGAAGGGATATTGAAGGTGGCAGATTTTGGACTGGCAAATTTCTCCAATTCTGGGAACAAGCAGCCCCTCACTAGTCGTGTAGTCACGTTATGGTATCGTCCTCCAGAACTTTTGCTCGGTTCAACAGATTATGGTCCATCCGTGGATATTTGGAGTGTTGGCTGTGTATTTGCAGAATTACTAATTGGGAAGCCTATACTTCAGGGGAGAACCGAGGTTGAACAATTGCACAAAATTTTCAAGCTTTGTGGCTCCCCACCCGAAGAATACTGGAAAAAGACCAGACTTCCTCATGCAACATTGTTCAAGCCACAACAACCATACGATAGTTGCCTCCGACAGACATTTAAAGATTTTCACGTATCCAGTGTAAATCTTCTACAAACTCTTCTTTCTGTCGAACCAAGCAAACGTGGGACTGCCTCCTCTGCTCTCTCATTAGAGTATTTCAAAACAAAACCTTATGCATGCGACCCATCAAGCTTACCAATATACCCACCTAGCAAGGAGATTGATGCGAAACATGAAGAGGAGTCAAGAAGGAAAAAAATTGGTGGGCGAGCTGGTGTACCAGAATCAAGAAAACCATCAAGAAAGCCACTAGCACTGAGTAAATTAGCCCCAGCAGAGGATTTGACAACTCAAACTCAAACTTCCCAAAAGAATGATGATAGATGTATCCACACCCTTAAAGAAGAGAACACCCATGCAGGTGAGGGGGCACCAAAGCAGTCTGGTGGTAAACCAGACGATGATTCCCATGTGAAGAAGGCATCTCAAGTAGATATTCCCTTTCCTGGGCCATTGCAAGTTTCAAAATCAAGTGGCTTTGCATGGGCTAAAAGGCGTAGAGATGACGCTTCAATTAGAACTCACAGTCGTTCTATTTCTAGAGGGGGCCATGACCTACTTGAAATTTCTAAGCTTGCCATGAAAAATCAATGGAGTAAGTTTGATCGTCCAGATTCATTTGATACTGAGGAGTACCATTCACAAGAACTTTCCATGGCGCTTTATAACAGGCAAGACTCATTATCCAAGAGAAGTAACCTGAGTTACCAGGATCAAGGAGAAAAGGTAGAGTTTTCAGGGCCTCTGTTATCTCAAATGCACACAGTTGATGAGCTCTTAGAAAGACATGAGCGTCATATCCGGCGTACTGTCAGAAGATCATGGTTTCAGAGAGGTAAGAAGCAAGGGAAGTAA 1893 0.4501 MGCVVAKQAVSVTPAIEHSVESDKNRKKKTESSRSELGESGRASSNAGSESLSFRLGNLSKYVEGEQAAAGWPAWLSAVASEAIHGWVPLRADAYEKLEKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSRPEIKFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGNKQPLTSRVVTLWYRPPELLLGSTDYGPSVDIWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKTRLPHATLFKPQQPYDSCLRQTFKDFHVSSVNLLQTLLSVEPSKRGTASSALSLEYFKTKPYACDPSSLPIYPPSKEIDAKHEEESRRKKIGGRAGVPESRKPSRKPLALSKLAPAEDLTTQTQTSQKNDDRCIHTLKEENTHAGEGAPKQSGGKPDDDSHVKKASQVDIPFPGPLQVSKSSGFAWAKRRRDDASIRTHSRSISRGGHDLLEISKLAMKNQWSKFDRPDSFDTEEYHSQELSMALYNRQDSLSKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKQGK 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10319g00002 630 ProSiteProfiles Protein kinase domain profile. 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10319g00002 630 Gene3D Phosphorylase Kinase; domain 1 82 177 - -
Vium10319g00002 630 PANTHER CELL DIVISION PROTEIN KINASE 93 383 - -
Vium10319g00002 630 Gene3D Transferase(Phosphotransferase) domain 1 178 418 - -
Vium10319g00002 630 FunFam probable serine/threonine-protein kinase At1g54610 82 177 - -
Vium10319g00002 630 SMART serkin_6 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10319g00002 630 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Vium10319g00002 630 FunFam probable serine/threonine-protein kinase At1g54610 178 417 - -
Vium10319g00002 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Vium10319g00002 630 MobiDBLite consensus disorder prediction 398 423 - -
Vium10319g00002 630 SUPERFAMILY Protein kinase-like (PK-like) 88 386 IPR011009 -
Vium10319g00002 630 MobiDBLite consensus disorder prediction 453 467 - -
Vium10319g00002 630 Pfam Protein kinase domain 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10319g00002 630 MobiDBLite consensus disorder prediction 438 452 - -
Vium10319g00002 630 MobiDBLite consensus disorder prediction 15 50 - -
Vium10319g00002 630 MobiDBLite consensus disorder prediction 19 36 - -
Vium10319g00002 630 MobiDBLite consensus disorder prediction 390 523 - -
Vium10319g00002 630 MobiDBLite consensus disorder prediction 507 523 - -
Vium10319g00002 630 CDD STKc_CDK9_like 95 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10319g00002 Vium-Chr10319 23893 29939 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10319g00002 87 439 Core Cell Cycle Gene Families AT5G10270 49.051 2.36e-115 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium10319g00002 Pkinase 1.2e-69 CL0016