Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10308g00002 ATGGGTCGTGTTAAACTCGAGATAAAGAGAATAGAGAATCCCGTCAATCGACAAGTTACATTCTCAAAACGTAGAAATGGCCTTATCAAGAAAGCTTATGAGCTTTCAATCCTGTGTGACATTGATATTGCAGTCATAATGTTTTCGCCTTCGGGTCGTGTTAACCATTTTTCTGGTCGGAGGAGAATTGAGGATGTTTTTACTCGCTACATTAATCTTCCAGACCAAGAAAGAGATAATGCTGTAAGTTTTCCAGAACTACCATACCGCAGGGGTATTCAGAATAAGGAGTATTTGCTAAGGACACTTCAGCAACTGAGGAATGAAAATGACATAGCTCTTCAACTGGCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAATAGGCTACAACAGCAACTTCAAATGGCCGAAGAGCAGATAAGGTTATATGAACCCGACTCATTAAAGATGTCGTCAATGGCCGATCTTGAAAACAGTGAAAAACACCTTTTAGATGTCTTGACACGAGTCATGCAGAGAAAGATAATAGTCAGCCCATCTTGTGGTTCACCCATTTCTTCAAGTATTCTTCCTGGCCATATTGCTTGA 609 0.4056 MGRVKLEIKRIENPVNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRGIQNKEYLLRTLQQLRNENDIALQLANPGDINSEIEELQQEVNRLQQQLQMAEEQIRLYEPDSLKMSSMADLENSEKHLLDVLTRVMQRKIIVSPSCGSPISSSILPGHIA 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10308g00002 202 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vium10308g00002 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium10308g00002 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium10308g00002 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium10308g00002 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium10308g00002 202 Coils Coil 119 153 - -
Vium10308g00002 202 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium10308g00002 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium10308g00002 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium10308g00002 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Vium10308g00002 202 FunFam MADS-box transcription factor 41 13 92 - -
Vium10308g00002 202 Gene3D - 15 86 IPR036879 GO:0003677|GO:0046983
Vium10308g00002 202 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10308g00002 Vium-Chr10308 13864 16958 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10308g00002 1 201 Type I MADS-box Gene Family AT1G22130 61.682 3.29e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium10308g00002 SRF-TF 5.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10308g00002 - - pvu:PHAVU_008G170400g 332.798