LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium10308g00001	ATGGGTCGTGTTAAACTCGAGATAAAGAGAATAGAGAATCCCGTCAATCGACAAGTTACATTCTCAAAACGTAGAAATGGCCTTATCAAGAAAGCTTATGAGCTTTCAATCCTGTGTGACATTGATATTGCAGTCATAATGTTTTCGCCTTCGGGTCGTGTTAACCATTTTTCTGGTCGGAGGAGAATTGAGGATGTTTTTACTCGCTACATTAATCTTCCAGACCAAGAAAGAGATAATGCTGTAAGTTTTCCAGAACTACCATACCGCAGGGGTATTCAGAATAAGGAGTATTTGCTAAGGACACTTCAGCAACTGAGGAATGAAAATGACATAGCTCTTCAACTGGCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAATAGGCTACAACAGCAACTTCAAATGGCCGAAGAGCAGATAAGGTTATATGAACCCGACTCATTAAAGATGTCGTCAATGGCCGATCTTGAAAACAGTGAAAAACACCTTTTAGATGTCTTGACACGAGTCATGCAGAGAAAGGAATACTTAATGAGCCACCATCTATCTTCTTTTGACCCATCCAGTATTCAGGGAATACCAACCTCTTTCGACAATGTAGGTTGGTTGCAGGATGGGAATCAAAACCATGCTCAGATTTTTGATGCATCTGCTCCTTTAGATCCTCTCAGGGACTTGTCTTCCACAGTGTATGGTTCATTTTCTCAAGGGACAAGTTCAAATGTTGCTGATCCACGAGGCATAGGAGAATGTCATGTGTCAAATCCAAGTGATGGAACCCTTCAACCATGGCCTCAATGTTACACGTTGTATCCTCATCATCATATTCAACATGACATGGTGGGACCCGACATGCCAGATATGATGCCACATGCACAGGTCAACATCCCAATCACTACCTCACACGTGGAAGCACCCAAGAATGAACCTGTAGAATTTGATCAGTCTAAACAACAATCTCAAACTCATCCTCATACACATCAACATCAGCATCTCAATGCCCAATGA	1029	0.4189	MGRVKLEIKRIENPVNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRGIQNKEYLLRTLQQLRNENDIALQLANPGDINSEIEELQQEVNRLQQQLQMAEEQIRLYEPDSLKMSSMADLENSEKHLLDVLTRVMQRKEYLMSHHLSSFDPSSIQGIPTSFDNVGWLQDGNQNHAQIFDASAPLDPLRDLSSTVYGSFSQGTSSNVADPRGIGECHVSNPSDGTLQPWPQCYTLYPHHHIQHDMVGPDMPDMMPHAQVNIPITTSHVEAPKNEPVEFDQSKQQSQTHPHTHQHQHLNAQ	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium10308g00001	342	Coils	Coil	119	153	-	-
	Vium10308g00001	342	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Vium10308g00001	342	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Vium10308g00001	342	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Vium10308g00001	342	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Vium10308g00001	342	FunFam	MADS-box transcription factor 41	13	92	-	-
	Vium10308g00001	342	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Vium10308g00001	342	SUPERFAMILY	SRF-like	2	79	IPR036879	GO:0003677\|GO:0046983
	Vium10308g00001	342	MobiDBLite	consensus disorder prediction	319	342	-	-
	Vium10308g00001	342	MobiDBLite	consensus disorder prediction	316	342	-	-
	Vium10308g00001	342	Gene3D	-	15	86	IPR036879	GO:0003677\|GO:0046983
	Vium10308g00001	342	CDD	MADS_MEF2_like	2	75	IPR033896	GO:0000977\|GO:0045944
	Vium10308g00001	342	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	311	-	-
	Vium10308g00001	342	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Vium10308g00001	342	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium10308g00001	Vium-Chr10308	3870	11944	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium10308g00001	1	312	Type I MADS-box Gene Family	AT1G22130	56.740	4.00e-117	340

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Vium10308g00001		SRF-TF	1.4e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium10308g00001	-		-	pvu:PHAVU_008G170400g	598.586