Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10301g00001 ATGGAGGAGAACCAGAAGGGGAAGCAGGGCAAGGAAGAAGTGCGGTACCGTGGCGTGCGGCGGCGGCCTTGGGGGAAGTACGCGGCGGAGATAAGGGATCCGTCAAAGCAATGGTCGAGGCTGTGGTTGGGGACATTTGACACCGCTGAAGAAGCTGCTAGAGCTTATGATCGTGCAGCGTTTAACTTGAGAGGTCATCTTGCAATTCTGAATTTTCCTAGTGAGTACTATTCTCAGATAAGGGGTTCACCACCTTATCCACCTCATTTAGCACCACCATCTTCTTCCTCTTCTCATGGTGGTGGAAGCACTTCTTCTTCTGCTGCATATCATAGGCCTGTTTTCGAGATTCCTTGTTTGGATGATAAGGTGTTGGAGGATCTTCTTGGTCAGTCAGAGGAGCACAAGAAGAAAAAGAAGGGAGAATAG 429 0.4965 MEENQKGKQGKEEVRYRGVRRRPWGKYAAEIRDPSKQWSRLWLGTFDTAEEAARAYDRAAFNLRGHLAILNFPSEYYSQIRGSPPYPPHLAPPSSSSSHGGGSTSSSAAYHRPVFEIPCLDDKVLEDLLGQSEEHKKKKKGE 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10301g00001 142 MobiDBLite consensus disorder prediction 81 107 - -
Vium10301g00001 142 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Vium10301g00001 142 PANTHER DNA-BINDING DOMAIN 7 111 IPR044808 GO:0003700|GO:0009873
Vium10301g00001 142 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Vium10301g00001 142 MobiDBLite consensus disorder prediction 93 107 - -
Vium10301g00001 142 FunFam Ethylene-responsive transcription factor 2 14 75 - -
Vium10301g00001 142 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Vium10301g00001 142 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Vium10301g00001 142 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Vium10301g00001 142 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Vium10301g00001 142 CDD AP2 15 73 IPR001471 GO:0003700|GO:0006355
Vium10301g00001 142 Pfam AP2 domain 15 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10301g00001 Vium-Chr10301 9568 10409 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10301g00001 13 137 AP2-EREBP Transcription Factor Family AT3G23230 67.200 2.73e-46 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium10301g00001 AP2 7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10301g00001 - - gmx:100793703 201.83