Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10300g00003 ATGAAGATGAGAGCTTTTGTTGTAGTTTGTTTGGCACTGTTCTGTATCCTAGGGGTTTGTCAAGGTGGCAACCTTAGAAAAAAATTCTACAAGCGGACATGTTCTCAAGCCGAGGACATTGTTAGGACCAAAATCCAGGAACATGTCTCTGCAAGGCCTGAATTGCCTGCGAAGTTGATCAGACTGCATTTTCATGATTGTTTTGTCAGGGGTTGTGATGGTTCGGTTTTGCTGGACTCCACTGACAGCAACACAGCAGAAAAGGATTCGATTCCGAACTTATCTCTGTCGGGCTTCGATGTCATTGATGACATAAAAGCATCATTGGAGGAAAAATGTCCTGGAACTGTATCATGTGCTGACATACTTGCATTGGCCGCCAGGGATGCTGTTTCTGTCCAGTTCAATAAGCCTATGTGGGAAGTGCTTACCGGTAGAAGGGATGGGAGGGTATCCATAAGTGGTGAAGCCTTAGCCAATCTGCCAGCCCCTTTTTTCAACATCACCCAGCTCAGACAAAGCTTTGCGAGTAAAAAGCTCACAGTGCATGATCTGGTTGTGTTATCAGGAGCACACACAATTGGGGTAGGTCATTGCAACTTATTCAGTAACAGGCTTTTCAACTTCACCGGAAAGGGTGATCAAGATCCTTCTCTGAATCCTACTTATGCAACTCTTTTGAAGACAAAATGTCAAAGTCTGAGTGACACCACCACTACAGTAGAGATGGATCCTGACAGTTCAAGCACCTTTGACAATGACTATTATTCTATCCTTCTTCAAAACAAGGGTCTATTCCAATCAGATGCTGCCCTTTTAACAGCCAAGGTCTCAAGAAACATTGTGAATGAATTGACCAAACAAGACAAGTTCTTCACAGAGTTTGGGCAGTCAATGAAGAGAATGGGAGCGATTGAGGTCCTCACCGGCTCGGATGGTGAAATTAGAACCAAGTGCTCTGTTGTCAAGATTCGATTCTCTGCCTGCTTGACACAACCACACAGAAAGATTCCTGGCAGCAATGCAGTGTCACACAAAGGGATTAAGAACAGGATGAAGATGAGAGCTTTTGTTGTAGTTTGTTTGGCACTGTTCTGTATCCTAGGGGTTTGTCAAGGTGGCAACCTTAGAAAAAAATTCTACAAGCGGACATGTTCTCAAGCCGAGGACATTGTTAGGACCAAAATCCAGGAACATGTCTCTGCAAGGCCTGAATTGCCTGCGAAGTTGATCAGACTGCATTTTCATGATTGTTTTGTCAGGGGTTGTGATGGTTCGGTTTTGCTGGACTCCACTGACAGCAACACAGCAGAAAAGGATTCGATTCCGAACTTATCTCTGTCGGGCTTCGATGTCATTGATGACATAAAAGCATCATTGGAGGAAAAATGTCCTGGAACTGTATCATGTGCTGACATACTTGCATTGGCCGCCAGGGATGCTGTTTCTGTCCAGTTCAATAAGCCTATGTGGGAAGTGCTTACCGGTAGAAGGGATGGGAGGGTATCCATAAGTGGTGAAGCCTTAGCCAATCTGCCAGCCCCTTTTTTCAACATCACCCAGCTCAGACAAAGCTTTGCGAGTAAAAAGCTCACAGTGCATGATCTGGTTGTGTTATCAGGAGCACACACAATTGGGGTAGGTCATTGCAACTTATTCAGTAACAGGCTTTTCAACTTCACCGGAAAGGGTGATCAAGATCCTTCTCTGAATCCTACTTATGCAACTCTTTTGAAGACAAAATGTCAAAGTCTGAGTGACACCACCACTACAGTAGAGATGGATCCTGACAGTTCAAGCACCTTTGACAATGACTATTATTCTATCCTTCTTCAAAACAAGGGTCTATTCCAATCAGATGCTGCCCTTTTAACAGCCAAGGTCTCAAGAAACATTGTGAATGAATTGACCAAACAAGACAAGTTCTTCACAGAGTTTGGGCAGTCAATGAAGAGAATGGGAGCGATTGAGGTCCTCACCGGCTCGGATGGTGAAATTAGAACCAAGTGCTCTGTTGTCAACTCTTAA 2028 0.4428 MKMRAFVVVCLALFCILGVCQGGNLRKKFYKRTCSQAEDIVRTKIQEHVSARPELPAKLIRLHFHDCFVRGCDGSVLLDSTDSNTAEKDSIPNLSLSGFDVIDDIKASLEEKCPGTVSCADILALAARDAVSVQFNKPMWEVLTGRRDGRVSISGEALANLPAPFFNITQLRQSFASKKLTVHDLVVLSGAHTIGVGHCNLFSNRLFNFTGKGDQDPSLNPTYATLLKTKCQSLSDTTTTVEMDPDSSSTFDNDYYSILLQNKGLFQSDAALLTAKVSRNIVNELTKQDKFFTEFGQSMKRMGAIEVLTGSDGEIRTKCSVVKIRFSACLTQPHRKIPGSNAVSHKGIKNRMKMRAFVVVCLALFCILGVCQGGNLRKKFYKRTCSQAEDIVRTKIQEHVSARPELPAKLIRLHFHDCFVRGCDGSVLLDSTDSNTAEKDSIPNLSLSGFDVIDDIKASLEEKCPGTVSCADILALAARDAVSVQFNKPMWEVLTGRRDGRVSISGEALANLPAPFFNITQLRQSFASKKLTVHDLVVLSGAHTIGVGHCNLFSNRLFNFTGKGDQDPSLNPTYATLLKTKCQSLSDTTTTVEMDPDSSSTFDNDYYSILLQNKGLFQSDAALLTAKVSRNIVNELTKQDKFFTEFGQSMKRMGAIEVLTGSDGEIRTKCSVVNS 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10300g00003 675 Pfam Peroxidase 392 637 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 Pfam Peroxidase 41 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 Gene3D - 28 322 - -
Vium10300g00003 675 FunFam Peroxidase 28 171 - -
Vium10300g00003 675 ProSitePatterns Peroxidases proximal heme-ligand signature. 535 545 IPR019793 -
Vium10300g00003 675 Gene3D - 379 674 - -
Vium10300g00003 675 ProSiteProfiles Plant heme peroxidase family profile. 24 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 SUPERFAMILY Heme-dependent peroxidases 376 674 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 CDD secretory_peroxidase 375 673 IPR033905 GO:0004601|GO:0042744
Vium10300g00003 675 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 SUPERFAMILY Heme-dependent peroxidases 25 322 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Vium10300g00003 675 FunFam Peroxidase 513 653 - -
Vium10300g00003 675 PANTHER PEROXIDASE 25-RELATED 12 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 ProSiteProfiles Plant heme peroxidase family profile. 375 674 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium10300g00003 675 FunFam Peroxidase 162 302 - -
Vium10300g00003 675 Gene3D Peroxidase, domain 2 513 653 - -
Vium10300g00003 675 Gene3D Peroxidase, domain 2 162 302 - -
Vium10300g00003 675 FunFam Peroxidase 379 522 - -
Vium10300g00003 675 CDD secretory_peroxidase 24 322 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10300g00003 Vium-Chr10300 37315 42679 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10300g00003 360 675 Peroxidase AT1G05260 54.859 8.65e-113 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10300g00003 - - vum:124819628 1344.33