Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10300g00001 ATGGCGGAAGGGAAGGAAGAGAGTAAATCTAGCGAAGAGAGCGTGAAGCTGTTCGTAGGGCAAGTGCCGAAGCACATGACCGAACCCGAACTCCTTGCAATGTTCCAGGAGTTCGCGCTCGTCGACGAGGTCAACATAATCAAGGACAAAGCAACTCGTGTTTCCCGAGGTTGTTGTTTCTTCATTTGTCCTTCCAGGGAGGAGGCTGATAAGGCCGTCAATGCGTGTCACAACAAGAAGACGCTACCCGGGGCATCCAGTCCATTACAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCGAAGAATGTATCCGAAGTCGAAATATCTGCACTTTTCTCCCAGTATGGAACCATAAAGGATTTACAGGTTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGACCAGGCGCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTAGTTGTTAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGAAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTACCACACAGTGATTCCCAGCACCCATCATTGTTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGTTAGTTCTAAGGAGACTATTTNCAGGTATTCACATGAACTATCACTCCTCNCTTCTCCCGGCTCTGTTTCACCTGCTAGTGGAAACAACAACACTGCTGCATCTTCTGGTGGCAGCAAAAATTCTGGGGGGCAGGTTGAAGGACCACCTGGTGCCAACCTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAACTTGCCAATGCTTTTCAGCCTTTCGGTATGGTCTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGCAAATGTTTTGTGTTTGTAAGTTATGATTCTCCAGAGGATGCTCAATCTGCCATTGGTATGATGAATGGATTCCAATTAGGAGGTAAGAAGTTAAAGGTCCAGCTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA 1104 0.4447 MAEGKEESKSSEESVKLFVGQVPKHMTEPELLAMFQEFALVDEVNIIKDKATRVSRGCCFFICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSQYGTIKDLQVLRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHSDSQHPSLFGALPMGYVPPYNGYGYQVSSKETIXRYSHELSLLXSPGSVSPASGNNNTAASSGGSKNSGGQVEGPPGANLFIYHIPQEFGDQELANAFQPFGMVLSAKVFVDKATGVSKCFVFVSYDSPEDAQSAIGMMNGFQLGGKKLKVQLKRDNKQGKPY 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10300g00001 367 MobiDBLite consensus disorder prediction 181 214 - -
Vium10300g00001 367 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Vium10300g00001 367 Gene3D - 2 100 IPR012677 -
Vium10300g00001 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 360 IPR000504 GO:0003723
Vium10300g00001 367 MobiDBLite consensus disorder prediction 249 277 - -
Vium10300g00001 367 SUPERFAMILY RNA-binding domain, RBD 103 362 IPR035979 GO:0003676
Vium10300g00001 367 Gene3D - 251 359 IPR012677 -
Vium10300g00001 367 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Vium10300g00001 367 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Vium10300g00001 367 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Vium10300g00001 367 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Vium10300g00001 367 CDD RRM1_2_CELF1-6_like 16 92 - -
Vium10300g00001 367 MobiDBLite consensus disorder prediction 249 273 - -
Vium10300g00001 367 Gene3D - 101 192 IPR012677 -
Vium10300g00001 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Vium10300g00001 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Vium10300g00001 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 354 IPR000504 GO:0003723
Vium10300g00001 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Vium10300g00001 367 PANTHER RNA BINDING PROTEIN 14 361 - -
Vium10300g00001 367 FunFam RNA-binding protein BRN1 249 359 - -
Vium10300g00001 367 SMART rrm1_1 104 179 IPR000504 GO:0003723
Vium10300g00001 367 SMART rrm1_1 16 92 IPR000504 GO:0003723
Vium10300g00001 367 SMART rrm1_1 283 356 IPR000504 GO:0003723
Vium10300g00001 367 FunFam RNA-binding protein BRN1 2 99 - -
Vium10300g00001 367 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Vium10300g00001 367 CDD RRM3_CELF1-6 284 356 - -
Vium10300g00001 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Vium10300g00001 367 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10300g00001 Vium-Chr10300 4894 12366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10300g00001 281 357 Eukaryotic Initiation Factors Gene Family AT1G71770 37.662 2.22e-08 53.9