Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10294g00009 ATGGAGATTTCTGCCATGGCTTCTTCAGCTACTCCAAGACCTTCTCTTCCAACTCCTTCTTCACACCCAGTTGTCACCACTTTTACCAAACCTCAACTCAGACGCAACCACATAGCACTGCCAACCTCATCCACCATTTCGCTCCTCGCTCTCTTCGCCCCTCCCAACGAAGCCAAAGCCGCTGTCTCCATCGCCAAGGATCAGATTGTTTCGTCTCTCACCCAGGTTGAGAAAACGATTGACCAGGTTCAGGAAGTGGGTTCGAGTGTTCTGGACACGGCACAGCGTGTTGCTGAGGTAATTGGGAACGCTTTGAAACCTGGCATCGAAACGGCGTTGCCGATTGTGCAGCAAGCTGGGGAAGAGGCCTTGAAAATTGCTTCCCCTGCCATTTCTGAAGCTTCCAAGAAAGCCCAAGAAGCACTGCAAAGCTCTGGTGTTGATACCCAACCTGTTATCACTGCTGCTAAGACAGTGGCAGATGCTGCACAACAAACGACCAAGGTGATTGATGTTGCCAAGCCAATAGCTTCTTCAACCGTTGAAACCATATCCTCTTCAGACCCTACTGTGATTGCTGGAACTGCAGGAGCACTATTCGTTGCCTACCTCCTGATTCCTCCTATCTGGTCTGTCATCTCCTCTAATCTTCGTGGTTACAAAGGAGACCTAACTCCTGCTCAAGCCCTTGATTTGATATCTGCACAAAACTACGTTTTGATTGATATCAGGTCAGAGAAAGATAAGGACAAGACTGGTATCCCTCGCCTTCCCTCTAGTGCTAAAAACAGGCTGGTTGCCATTCCTTTGGAAGAACTGCCAAGTAAGCTCAAAGGGCAGGTGAAGAATGTGAAGAAATTGGAAGCTGAAGTAGTGGCTTTGAAGATTTCTTATCTGAAGAAAATCAACAAAGGCACCAACGTTGTGATCCTGGACTCGTATTCGGACGTAGCAAAAACAGTGGGAAGAACACTGACTAACCTTGGTTTTAAGAACACATGGATCGTTGCTGATGGATTCTCTGGGAACAAAGGGTGGTTGCAGAGTAGATTAGGAACAGATTCTTATAACTTTTCGTTCGCAGAGGTGCTGTCACCATCCAGGATCATCCCTGCATCTGTGAGAGCTTTTGGCACAACTAGCCAATCTAGCACTAAGCTTCTTCCTGGGGCTGACTAA 1179 0.4767 MEISAMASSATPRPSLPTPSSHPVVTTFTKPQLRRNHIALPTSSTISLLALFAPPNEAKAAVSIAKDQIVSSLTQVEKTIDQVQEVGSSVLDTAQRVAEVIGNALKPGIETALPIVQQAGEEALKIASPAISEASKKAQEALQSSGVDTQPVITAAKTVADAAQQTTKVIDVAKPIASSTVETISSSDPTVIAGTAGALFVAYLLIPPIWSVISSNLRGYKGDLTPAQALDLISAQNYVLIDIRSEKDKDKTGIPRLPSSAKNRLVAIPLEELPSKLKGQVKNVKKLEAEVVALKISYLKKINKGTNVVILDSYSDVAKTVGRTLTNLGFKNTWIVADGFSGNKGWLQSRLGTDSYNFSFAEVLSPSRIIPASVRAFGTTSQSSTKLLPGAD 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10294g00009 392 CDD RHOD 228 342 - -
Vium10294g00009 392 Gene3D - 221 360 IPR036873 -
Vium10294g00009 392 SMART rhod_4 224 352 IPR001763 -
Vium10294g00009 392 MobiDBLite consensus disorder prediction 1 23 - -
Vium10294g00009 392 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 39 353 IPR044690 GO:0009704|GO:0071277|GO:0090333
Vium10294g00009 392 ProSiteProfiles Rhodanese domain profile. 234 355 IPR001763 -
Vium10294g00009 392 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 200 342 IPR036873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10294g00009 Vium-Chr10294 56462 58745 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10294g00009 5 313 Sulfurtransferasese or Rhodanese AT5G23060 67.419 2.58e-147 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10294g00009 - - gmx:100813363 692.96