Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10294g00002 ATGGAAACTTTGATGGGTCTTAAAGCAGGCAAGCCTGTTCAAGTTCCACTATATGATTTCAAGTCTAGTTCTCGCATAGGTTACAGGACTGTTGAAGTCCCTAGCTCTCGTATTGTAATCATAGAAGGCATCTACGCCTTAAGTGAAAAATTAAGACCTTTACTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGACCTTGTTAAGCGTGTATTACGGGACATTCACCGTGCTGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTATATCCTATGTATAAAGCTTATATTGAGCCAGATCTTCAAACAGCACATATAAAAGTCATAAACAAGTTTAATCCATTCTCTGGATTTCAAAATCCCACATATATATTGAAGTCAGCAAGAACTGTGACAGTTGATCAAATCAAGGAAATTATTGCTGCACAGCATACTGAAACCAAAGAGGAAACGTATGACATATTTCTTCTACCGCCTGGGGAAGACCCTGAAGCTTGTCAATCATATTTGAGGATGAGAAACCGCGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTGACAGATAGTCCATTCATAATATCTCCTCGAATTACTTTTGAGGTCAGTGTGCGCCTTCTTGGAGGGCTGATGGCCTTAGGATACACAATTGCTTCTATCCTGAAAAGAAGCAGCCATATCTTTCGTGATGATAAAGTGACCATAAAAACTGATTGGTTGGAACAACTGAATCGCACATATGTTCAGGTGCAAGGGAAAGACAGGAACTATTGCAAGTTTGTAGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTTCTCGCACTTATATTGAACAAATTCAGCTAGAAAAGCTTGTGAACGATGTGATGGCATTGCCAGACGATCTTAAGTCAAAACTCAGCATAGATGATGACGTAGTTTCAAGCCCCAAAGAAGCCCTTTCCAGGGCTTCTGCAGATAGAAGAATGAAGTATCTTAATCGTGGTATTTCACACTCATATTCGACTCAAAGGGACAAGATTCTACCTAAGCTGACTAAACTTGCTATAAATAACAGAAGATTCGATGGAAGAACTCTGGAATCACCTGCATCGATTGCTAACCATGGGGTCATCACTCAACTTTCTGATCAAATTTCCACATTAAATGAACGAATGGATGAATTCACCTCCCGTATTGAAGAATTGAATTCAAAGTTTGCTAGCAAAAAAGTTTCGGCCAGTCAACAAAACTTGGCTTCACAGGCTGAGGCCGGTAATGGCTCAGGCCCTACTTCCTTGTTTGTAACTGGATTAGGCAATGGTTCATTGACTGGATCATTGCTGCCTAATTCTTCATCATCTTCTCAATTGGCGAAAGAGTCTCCCCTGATGGACGAGGTATTAGTTATTGCACGGGGACAGCGTCAAATCATGCATCAACTTGACACTCTGAGCAATATTTTGCATGAATACTTTGGAGAACGGTCACGCCTTGGAAGACCAAATCAGACAGGTAGAATGCGTGAACCTGATTCTGTTGTCATCCCTATGGTTCTGACTCTGGTCATTGGTGTTGTTGGTGTGTTTTTGTTCAAGGGTGTGACATCCCAAAAGTAG 1617 0.4106 METLMGLKAGKPVQVPLYDFKSSSRIGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIHRAGQEPEEIIHQISETVYPMYKAYIEPDLQTAHIKVINKFNPFSGFQNPTYILKSARTVTVDQIKEIIAAQHTETKEETYDIFLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIASILKRSSHIFRDDKVTIKTDWLEQLNRTYVQVQGKDRNYCKFVAEKLGLDGSYVSRTYIEQIQLEKLVNDVMALPDDLKSKLSIDDDVVSSPKEALSRASADRRMKYLNRGISHSYSTQRDKILPKLTKLAINNRRFDGRTLESPASIANHGVITQLSDQISTLNERMDEFTSRIEELNSKFASKKVSASQQNLASQAEAGNGSGPTSLFVTGLGNGSLTGSLLPNSSSSSQLAKESPLMDEVLVIARGQRQIMHQLDTLSNILHEYFGERSRLGRPNQTGRMREPDSVVIPMVLTLVIGVVGVFLFKGVTSQK 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10294g00002 538 Coils Coil 378 405 - -
Vium10294g00002 538 Gene3D - 131 291 - -
Vium10294g00002 538 Gene3D - 1 123 IPR027417 -
Vium10294g00002 538 ProSiteProfiles CYTH domain profile. 126 288 IPR023577 -
Vium10294g00002 538 Pfam Phosphoribulokinase / Uridine kinase family 2 114 IPR006083 GO:0005524|GO:0016301
Vium10294g00002 538 SUPERFAMILY CYTH-like phosphatases 137 285 IPR033469 -
Vium10294g00002 538 Pfam CYTH domain 149 282 IPR023577 -
Vium10294g00002 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 113 IPR027417 -
Vium10294g00002 538 CDD UMPK_like 2 117 - -
Vium10294g00002 538 PANTHER URIDINE KINASE 1 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10294g00002 Vium-Chr10294 7764 18914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10294g00002 7 200 PRT Gene Family AT5G40870 25.641 5.99e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10294g00002 K00876 - gmx:100803122 941.028