Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10294g00001 ATGGCACAAGATACTGTTTTTGGTGCTGACTCACCTCGACGACGTCTGTTGCGAGATCAGGTTCAAGTTGTTAAAAGAAAGGATTCTGATCGCTACGAAATTGTTCCTATCCAAGATTCCCTGTCATTTGAGAAAGGATTTTTCATATTCATTCGTGCGTGCCAATTACTGGCTCAAAAGAACGATGGAATCATATTAGTAGGAGTTGCAGGTCCATCTGGAGCAGGGAAAACTGTTTTCACTGAGAAGATACTCAATTTTATGCCAAGCATAGCTGTTATAACAATGGACAATTATAACGATTCTAGTAGAATTATTGATGGAAACTTTGATGACCCTCGGTTGACGGATTATGATACCTTGCTTGAAAATATACAGGGTCTTAAAGCAGGCAAGCCTGTTCAAGTTCCACTATATGATTTCAAGTCTAGTTCTCGCATAGGTTACAGGACTGTTGAAGTCCCTAGCTCTCGTATTGTAATCATAGAAGGCATCTACGCCTTAAGTGAAAAATTAAGACCTTTACTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGACCTTGTTAAGCGTGTATTACGGGACATTCACCGTGCTGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTATATCCTATGTATAAAGCTTATATTGAGCCAGATCTTCAAACAGCACATATAAAAGTCATAAACAAGTTTAATCCATTCTCTGGATTTCAAAATCCCACATATATATTGAAGTCAGCAAGAACTGTGACAGTTGATCAAATCAAGGAAATTATTGCTGCACAGCATACTGAAACCAAAGAGGAAACGTATGACATATTTCTTCTACCGCCTGGGGAAGACCCTGAAGCTTGTCAATCATATTTGAGGATGAGAAACCGCGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTGACAGATAGTCCATTCATAATATCTCCTCGAATTACTTTTGAGGTCAGTGTGCGCCTTCTTGGAGGGCTGATGGCCTTAGGATACACAATTGCTTCTATCCTGAAAAGAAGCAGCCATATCTTTCGTGATGATAAAGTGACCATAAAAACTGATTGGTTGGAACAACTGAATCGCACATATGTTCAGGTGCAAGGGAAAGACAGGAACTATTGCAAGTTTGTAGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTTCTCGCACTTATATTGAACAAATTCAGCTAGAAAAGCTTGTGAACGATGTGATGGCATTGCCAGACGATCTTAAGTCAAAACTCAGCATAGATGATGACGTAGTTTCAAGCCCCAAAGAAGCCCTTTCCAGGGCTTCTGCAGATAGAAGAATGAAGTATCTTAATCGTGGTATTTCACACTCATATTCGACTCAAAGGGACAAGATTCTACCTAAGCTGACTAAACTTGCTATAAATAACAGAAGATTCGATGGAAGAACTCTGGAATCACCTGCATCGATTGCTAACCATGGGGTCATCACTCAACTTTCTGATCAAATTTCCACATTAAATGAACGAATGGATGAATTCACCTCCCGTATTGAAGAATTGAATTCAAAGTTTGCTAGCAAAAAAGTTTCGGCCAGTCAACAAAACTTGGCTTCACAGGCTGAGGCCGGTAATGGCTCAGGCCCTACTTCCTTGTTTGTAACTGGATTAGGCAATGGTTCATTGACTGGATCATTGCTGCCTAATTCTTCATCATCTTCTCAATTGGCGAAAGAGTCTCCCCTGATGGACGAGGTATTAGTTATTGCACGGGGACAGCGTCAAATCATGCATCAACTTGACACTCTGAGCAATATTTTGCATGAATACTTTGGAGAACGGTCACGCCTTGGAAGACCAAATCAGACAGGTAGAATGCGTGAACCTGATTCTGTTGTCATCCCTATGGTTCTGACTCTGGTCATTGGTGTTGTTGGTGTGTTTTTGTTCAAGGGTGTGACATCCCAAAAGTAG 1980 0.4076 MAQDTVFGADSPRRRLLRDQVQVVKRKDSDRYEIVPIQDSLSFEKGFFIFIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKILNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIQGLKAGKPVQVPLYDFKSSSRIGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIHRAGQEPEEIIHQISETVYPMYKAYIEPDLQTAHIKVINKFNPFSGFQNPTYILKSARTVTVDQIKEIIAAQHTETKEETYDIFLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIASILKRSSHIFRDDKVTIKTDWLEQLNRTYVQVQGKDRNYCKFVAEKLGLDGSYVSRTYIEQIQLEKLVNDVMALPDDLKSKLSIDDDVVSSPKEALSRASADRRMKYLNRGISHSYSTQRDKILPKLTKLAINNRRFDGRTLESPASIANHGVITQLSDQISTLNERMDEFTSRIEELNSKFASKKVSASQQNLASQAEAGNGSGPTSLFVTGLGNGSLTGSLLPNSSSSSQLAKESPLMDEVLVIARGQRQIMHQLDTLSNILHEYFGERSRLGRPNQTGRMREPDSVVIPMVLTLVIGVVGVFLFKGVTSQK 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10294g00001 659 CDD UMPK_like 66 238 - -
Vium10294g00001 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 234 IPR027417 -
Vium10294g00001 659 PANTHER URIDINE KINASE 17 421 - -
Vium10294g00001 659 Pfam Phosphoribulokinase / Uridine kinase family 67 235 IPR006083 GO:0005524|GO:0016301
Vium10294g00001 659 SUPERFAMILY CYTH-like phosphatases 258 406 IPR033469 -
Vium10294g00001 659 ProSiteProfiles CYTH domain profile. 247 409 IPR023577 -
Vium10294g00001 659 Pfam CYTH domain 270 403 IPR023577 -
Vium10294g00001 659 PRINTS Uridine kinase signature 223 236 - -
Vium10294g00001 659 PRINTS Uridine kinase signature 64 81 - -
Vium10294g00001 659 PRINTS Uridine kinase signature 131 146 - -
Vium10294g00001 659 PRINTS Uridine kinase signature 187 197 - -
Vium10294g00001 659 Gene3D - 65 248 IPR027417 -
Vium10294g00001 659 Gene3D - 253 407 - -
Vium10294g00001 659 Coils Coil 499 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10294g00001 Vium-Chr10294 7764 21609 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10294g00001 65 321 PRT Gene Family AT5G40870 24.812 9.52e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10294g00001 K00876 - gmx:100803122 1170.99