Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10288g00005 ATGGCTGCTTACACTTGTTCTGCCACCGACCTCCACCCTCTTCTTGGCGGCGGCGCCAACGCCACCGCTGCTGCAGAATACATCTGCGGCCGTTTTGAGGCTATTTCAAACAAGTTTGTGGACACCACTTATGCTGTTGACAACACTTTTCTTCTCTTCTCTGCTTACCTTGTATTCGCCATGCAACTTGGCTTTGCCATGCTTTGTGCTGGTTCTGTACGTGCCAAGAACACCATGAACATTATGCTGACGAATGTCCTGGATGCCGCCACCGGTGGCATCTTCTTCTACGTGTTTGGCTTTGCCTTTGCTTTTGGCACCCCTTCCAACGGTTTCATTGGGAAACACTTCTTTGGCCTCGATAAGATTCCGTCGTCGGGTTTTGACTACGGGTACTTTCTCTTTCAATGGGCTTTTGCCATTGCTGCTGCGGGGATTACAAGTGGTTCCATCGCGGAGAGAACACAGTTTGTGGCTTATTTGATTTACTCGTCGGTTTTGACTGGTTTGGTGTACCCTATTGTGGCGCATTGGTTTTGGTGTTCTGATGGGTGGGGTAGTGCTGCGAGAGGGGAGGGTTTGTTGTTTGGATCAGGGGTTATTGATTTTGCTGGGTCTGGTGTTGTTCATTTGGTTGGTGCTGTTGCTGGGTTATGGGGTGCTGTGATTGAAGGCCCTAGAATTGGGAGGTTTGATCATAGTGGAAAGGCTGTGCCAATGAAAGGACACAGTGGAACGTTGGTTATTTTGGGGACGTTCTTGTTGTGGTTTGGTTGGTATGGTTTCAACCCTGGTTCGTTTCTGAATATTTTGAAGGCTTATGGAGAGAGTGGTTCTTATTATGGACAATGGAGTGCTGTTGGGAGAACTGCAGTGACCACAACTCTTGCTGGATGTTCAGCAGCACTGACAACACTGTTTGCGAAACGTATGCAAACGGGACATTGGAATGTGACTGATGTGTGCAATGGTTTGCTTGGAGGGTTTGCTGCTGTTACTGGAGGGTGTGCAGTGGTGGATCCTTGGGCGGCGATCATATGTGGGTTTGTAGCTGCTTGGGTGCTGATTGGTTTCAACATGCTTGCTGAGAAGTTGAAGTATGATGACCCTCTTGAAGCTGCCCAACTTCATGGCGGGTGTGGCACATGGGGGATTATCTTCACTGCTTTGTTTGCTAAGAAGGAGTATGTGAATGAGGTTTATCCAGGGCTACCTAGTAGACCTTATGGGTTGTTCATGGGAGGAGGTGCAAGGTTGTTGGCTGCACATGTTGTTCAGATTTTGTCCATCATTGCTTGGGTGAGTGTCACAATGGGAACAGTGTTCTTTGTGCTGTTGAAACTGGACCTGCTGAGGATATCACATGATGAGGAGATGGCGGGGTTGGATTTAACCAGCCATGGAGGAATGGCATATGAGTATAACGAAAAGAATGGAAGGAATCCGGTATTTGAAGCAACTGTTTGA 1467 0.4813 MAAYTCSATDLHPLLGGGANATAAAEYICGRFEAISNKFVDTTYAVDNTFLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFFYVFGFAFAFGTPSNGFIGKHFFGLDKIPSSGFDYGYFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLVYPIVAHWFWCSDGWGSAARGEGLLFGSGVIDFAGSGVVHLVGAVAGLWGAVIEGPRIGRFDHSGKAVPMKGHSGTLVILGTFLLWFGWYGFNPGSFLNILKAYGESGSYYGQWSAVGRTAVTTTLAGCSAALTTLFAKRMQTGHWNVTDVCNGLLGGFAAVTGGCAVVDPWAAIICGFVAAWVLIGFNMLAEKLKYDDPLEAAQLHGGCGTWGIIFTALFAKKEYVNEVYPGLPSRPYGLFMGGGARLLAAHVVQILSIIAWVSVTMGTVFFVLLKLDLLRISHDEEMAGLDLTSHGGMAYEYNEKNGRNPVFEATV 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10288g00005 488 FunFam Ammonium transporter 28 485 - -
Vium10288g00005 488 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vium10288g00005 488 PANTHER AMMONIUM TRANSPORTER 26 468 - -
Vium10288g00005 488 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vium10288g00005 488 NCBIfam ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vium10288g00005 488 SUPERFAMILY Ammonium transporter 44 452 - -
Vium10288g00005 488 Gene3D Ammonium transporter AmtB like domains 28 487 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10288g00005 Vium-Chr10288 37471 39107 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10288g00005 5 485 Inorganic Solute Cotransporters AT4G13510 72.407 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10288g00005 K03320 - cave:132166278 799.66