Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10288g00004 ATGGAAGATGAACGCAGAGACAAAGACAAAGACAAACACGCAACAAAATCTGACAACTCAGGGACCCAATTAAAAGTTCTTATTGTAGATGATGATAAGGTTGTTCGACTGACTCACAAAATGCTGTTGGACAGAGTTGGGGTAAAAGATCACGTTGCTGTGGAAAATGGCAAAGAAGCAGTTGAACTTCACAACAATGGTCAAAGTTTTGACCTGATTCTCATGGACAAGGACATGCCAGTCATGAATGGAACTGAGGCAACAAGGACACTTCGTTCAATGGGCGTTAGTTGCAAGATCTTTGGTGTGTCGTCATCAACCTCTAATCAGATATATGTAAAAGAATTTGTTGAAGCAGGGCTGAATGGCTTCTACACAAAACCCTTGACTGTTAAAATTCTTGGTGAAATTCTTGAGAAGATTAAGTCATGA 432 0.4005 MEDERRDKDKDKHATKSDNSGTQLKVLIVDDDKVVRLTHKMLLDRVGVKDHVAVENGKEAVELHNNGQSFDLILMDKDMPVMNGTEATRTLRSMGVSCKIFGVSSSTSNQIYVKEFVEAGLNGFYTKPLTVKILGEILEKIKS 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10288g00004 143 CDD REC_hyHK_CKI1_RcsC-like 26 138 - -
Vium10288g00004 143 SMART REC_2 24 138 IPR001789 GO:0000160
Vium10288g00004 143 ProSiteProfiles Response regulatory domain profile. 25 142 IPR001789 GO:0000160
Vium10288g00004 143 Gene3D - 2 143 - -
Vium10288g00004 143 SUPERFAMILY CheY-like 23 141 IPR011006 -
Vium10288g00004 143 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 142 - -
Vium10288g00004 143 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10288g00004 Vium-Chr10288 34883 35475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10288g00004 24 130 Response Regulator Gene Family AT3G04280 48.148 3.90e-25 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium10288g00004 Response_reg 1.1e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10288g00004 - - var:108322984 151.754