Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10288g00003 ATGAAACCTAAGAACTCAAGTTCTCAATTGAAAGCACTTGTTGTGGATGATGACAGAGTCAACCGAATGACTCATCAAGCGCTGTTGAAAAAGGTTGGGGTGGAAAATCTTGCTTCAGTGGAAAATGGGAAAAAAGCAGTGGACCTTTACTGCAATGGTGAAAGTTTTGACCTAATTCTCATGGATAAAGACATGCCTGTCATGAATGGAATTGAGGCAACAAAGCAACTTCGTTCAATGGGAATTCGTGACATGATTGTGGGTGTGTCATCATCATCACGTGGTGCAGAGAACGTACAACAATTCATGGAAGCAGGACTAGATGAGTACTACACAAAACCCTTGACTGTTGATACGCTCAAAGCAATTCTTGATAAGATCAAATCATGA 390 0.4077 MKPKNSSSQLKALVVDDDRVNRMTHQALLKKVGVENLASVENGKKAVDLYCNGESFDLILMDKDMPVMNGIEATKQLRSMGIRDMIVGVSSSSRGAENVQQFMEAGLDEYYTKPLTVDTLKAILDKIKS 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10288g00003 129 SMART REC_2 10 124 IPR001789 GO:0000160
Vium10288g00003 129 Pfam Response regulator receiver domain 13 124 IPR001789 GO:0000160
Vium10288g00003 129 ProSiteProfiles Response regulatory domain profile. 11 128 IPR001789 GO:0000160
Vium10288g00003 129 Gene3D - 1 129 - -
Vium10288g00003 129 CDD REC_hyHK_CKI1_RcsC-like 13 124 - -
Vium10288g00003 129 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 128 - -
Vium10288g00003 129 SUPERFAMILY CheY-like 9 127 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10288g00003 Vium-Chr10288 31798 32647 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10288g00003 10 116 Response Regulator Gene Family AT3G04280 47.222 2.44e-27 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium10288g00003 Response_reg 1.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10288g00003 - - var:108322984 251.906