Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10286g00002 ATGTCTGGTCTGGGTGAACGCCAAACGGTTCCCCTTTCGGTGCTGCTGAAGCGTGAGTTGGCCAACGAGAAAACTGAGAAGCCGGATGTTGTCCTCGTGCACGGTCAAGCCAGTGAGAATAAGAAAGGAGAGGATTTCACGCTGCTGAAGACGGAATGCCAGAGGGTGGTGGGAGATGGGGTTTCTACGTATTCTGTTTTTGGGCTATTTGATGGACATAATGGATCTGCTGCCGCTATTTATGCCAAGGAGAATCTTCTGAACAACGTTTTAAGTGCAATTCCTTCTGATCTTAACAGAGATGAGTGGGTTTCAGCGTTGCCTAGGGCTTTGGTTGCAGGCTTTGTAAAAACTGATAAAGATTTTCAAAGAAAAGCACAAACATCAGGAACAACTGCAACCTTCATGATTATAGATGGATGTGTTGTGACAGTTGCATCAGTTGGTGATTCCCGTTGCATACTTGAACCTCATGAGGGTGGGATTTATTACTTGTCAGCAGACCATAGACTAGATAGCAACGAAGAGGAGAGGGTCCGCATCACTTCTAGTGGAGGTGAGGTTGGTCGTCTAAATACAGGGGGAGGCACAGAGGTTGGTCCTTTGAGATGTTGGCCAGGTGGTTTGTGTCTCTCCCGATCCATTGGTGATAAGGATGTTGGTGAATTTATTGTCCCTGTACCACACGTAAAGCAAGTGAAGCTTTCTACTGCTGGAGGCAGGATCATTATCAGCAGTGATGGTGTCTGGGATGCTCTAACAGCAGAAATGGCCTTTGATTGCTGTCGTGGCATGTCAGCTGAGGTTGCCGCACCACATATTGTGAAAGAAGCCGTGCAAGCAAAGGGACTTAGAGATGACACAACCTGCATTGTTATTGATGTATATCCGCAGGAGAAGCCACCTACTTCAGGGACAACACAAAAGAAACCGGTAAAAGGAAGGCTTAAGTCCATTTTTCGCAAAAAGGCCTCTGAATCATCATCTTACATTGACAAACAATACGTTGAGCCAGATGTGGTACGGGAACTATACGAGGAAGGATCTGCTATGCTTTCAGAGAGGTTGGAAACAAAATATCCACTCTGCAACATGTTCAAGTTGTTTGTCTGCGCAGTGTGTCAGGTAGAGATTAAACCTGGGGAGGGTATTTCCATACACGTGGGTGCGTCTAATCCAGGAAGGTTGCGTCCCTGGGATGGACCTTTCCTTTGTTCAAGTTGCCAGGAGAAGAGAGAAGCCATGGAAGGGAAGCGTACATCAGATAGACTTAGCAGCGGAAGTGACTAA 1290 0.4667 MSGLGERQTVPLSVLLKRELANEKTEKPDVVLVHGQASENKKGEDFTLLKTECQRVVGDGVSTYSVFGLFDGHNGSAAAIYAKENLLNNVLSAIPSDLNRDEWVSALPRALVAGFVKTDKDFQRKAQTSGTTATFMIIDGCVVTVASVGDSRCILEPHEGGIYYLSADHRLDSNEEERVRITSSGGEVGRLNTGGGTEVGPLRCWPGGLCLSRSIGDKDVGEFIVPVPHVKQVKLSTAGGRIIISSDGVWDALTAEMAFDCCRGMSAEVAAPHIVKEAVQAKGLRDDTTCIVIDVYPQEKPPTSGTTQKKPVKGRLKSIFRKKASESSSYIDKQYVEPDVVRELYEEGSAMLSERLETKYPLCNMFKLFVCAVCQVEIKPGEGISIHVGASNPGRLRPWDGPFLCSSCQEKREAMEGKRTSDRLSSGSD 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10286g00002 429 PANTHER PROTEIN PHOSPHATASE 34 294 IPR015655 GO:0004722|GO:0006470
Vium10286g00002 429 SMART PP2C_SIG_2 48 295 IPR001932 -
Vium10286g00002 429 CDD PP2Cc 40 295 IPR001932 -
Vium10286g00002 429 ProSiteProfiles PPM-type phosphatase domain profile. 29 295 IPR001932 -
Vium10286g00002 429 Pfam Protein phosphatase 2C 59 279 IPR001932 -
Vium10286g00002 429 SMART PP2C_4 19 293 IPR001932 -
Vium10286g00002 429 FunFam probable protein phosphatase 2C 12 34 301 - -
Vium10286g00002 429 Gene3D - 22 303 IPR036457 -
Vium10286g00002 429 SUPERFAMILY PP2C-like 40 295 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10286g00002 Vium-Chr10286 9366 14360 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10286g00002 1 429 PP2C-type Phosphatase Gene Family AT1G47380 76.744 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10286g00002 - - gmx:100796959 780.785