Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10286g00001 ATGTCTGGTCTGGGTGAACGCCAAACGGTTCCCCTTTCGGTGCTGCTGAAGCGTGAGTTGGCCAACGAGAAAACTGAGAAGCCGGATGTTGTCCTCGTGCACGGTCAAGCCAGTGAGAATAAGAAAGGAGAGGATTTCACGCTGCTGAAGACGGAATGCCAGAGGGTGGTGGGAGATGGGGTTTCTACGTATTCTGTTTTTGGGCTATTTGATGGACATAATGGATCTGCTGCCGCTATTTATGCCAAGGAGAATCTTCTGAACAACGTTTTAAGTGCAATTCCTTCTGATCTTAACAGAGATGAGTGGGTTTCAGCGTTGCCTAGGGCTTTGGTTGCAGGCTTTGTAAAAACTGATAAAGATTTTCAAAGAAAAGCACAAACATCAGGAACAACTGCAACCTTCATGATTATAGATGGATGTGTTGTGACAGTTGCATCAGTTGGTGATTCCCGTTGCATACTTGAACCTCATGAGGGTGGGATTTATTACTTGTCAGCAGACCATAGACTAGATAGCAACGAAGAGGAGAGGGTCCGCATCACTTCTAGTGGAGGTGAGGTTGGTCGTCTAAATACAGGGGGAGGCACAGAGGTTGGTCCTTTGAGATGTTGGCCAGGTGGTTTGTGTCTCTCCCGATCCATTGGTGATAAGGATGTTGGTGAATTTATTGTCCCTGTACCACACGTAAAGCAAGTGAAGCTTTCTACTGCTGGAGGCAGGATCATTATCAGCAGTGATGGTGTCTGGGATGCTCTAACAGCAGAAATGGCCTTTGATTGCTGTCGTGGCATGTCAGCTGAGGTTGCCGCACCACATATTGTGAAAGAAGCCGTGCAAGCAAAGGGACTTAGAGATGACACAACCTGCNAAAAAAAAAACTCAATTATTAAAGAATATATTTTAATAAACTCATACTGCAAAATGGTTTTGTACGATTATTTATTTTGTTATTCCAGTAAGTGTTTTCTGTAA 975 0.4441 MSGLGERQTVPLSVLLKRELANEKTEKPDVVLVHGQASENKKGEDFTLLKTECQRVVGDGVSTYSVFGLFDGHNGSAAAIYAKENLLNNVLSAIPSDLNRDEWVSALPRALVAGFVKTDKDFQRKAQTSGTTATFMIIDGCVVTVASVGDSRCILEPHEGGIYYLSADHRLDSNEEERVRITSSGGEVGRLNTGGGTEVGPLRCWPGGLCLSRSIGDKDVGEFIVPVPHVKQVKLSTAGGRIIISSDGVWDALTAEMAFDCCRGMSAEVAAPHIVKEAVQAKGLRDDTTCXKKNSIIKEYILINSYCKMVLYDYLFCYSSKCFL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10286g00001 324 PANTHER PROTEIN PHOSPHATASE 34 290 IPR015655 GO:0004722|GO:0006470
Vium10286g00001 324 ProSiteProfiles PPM-type phosphatase domain profile. 29 295 IPR001932 -
Vium10286g00001 324 Gene3D - 22 293 IPR036457 -
Vium10286g00001 324 CDD PP2Cc 40 290 IPR001932 -
Vium10286g00001 324 FunFam probable protein phosphatase 2C 12 34 300 - -
Vium10286g00001 324 SUPERFAMILY PP2C-like 40 290 IPR036457 -
Vium10286g00001 324 SMART PP2C_4 19 293 IPR001932 -
Vium10286g00001 324 Pfam Protein phosphatase 2C 59 279 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10286g00001 Vium-Chr10286 5203 9168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10286g00001 1 290 PP2C-type Phosphatase Gene Family AT1G47380 80.000 1.83e-173 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10286g00001 - - vum:124819590 651.358