Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10283g00007 ATGACCACACACAATCGTCGTTCGTCGTTTTCCTCCTCGACGACGTCGTCTTTGGCGAAGCGCCATGCATCCACCACCTCTTCCTCCTCCACCTCATCCTCTTTAGCGGCTCCTACAAACGTGCCAAAGAAGCGTCCACCTCTCTCTAACCTCACCAACACCGTCGCTCACCGCAACTCGTCCTCTTCGGTCCCGTGCGCAGCTAAACTCGCGAAGACGAAGAAAGAGGTTGTTCCGCCCTTCTCAGGCAACAAAAGGCCCACGCTGGTGAATGTCAAACCTACTAATGCGGTTGTTTTTCCCAAGGCTAATTCTCTCCCTCCGAGGAACGAAGCTCCTCCTCCTCCAGTTGTTGTCACTGTTACTGTTCCGCCTCCGGTGCTGGATGTTTCACCTTGTAAATCAGATGCAATGTCGGTTTCTATGGATGAGTCGATGTCTTCTTGTGATTCGTTCAAGAGCCCTGACATTGAATATGTGGACAATAGTGATGTGGCGGCTGTTGATTCAATTGAGAGGAAAACTTTCAGCAATCTCAACATATCTGATTCTACCGAATCAGGCAACATTTGTAGTAGAGACATACTTGTTGAGTTGGAAAAAGGGGACAAGTTTGTCAATGTTGATAACAATTACGCTGATCCTCAGCTCTGTGCATCCTTTGCTTGTGATATCTACAAGCACCTTCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGACTTCATGGAGAGAATTCAGAAGGACATAAACCCCAGTATGCGTGCAATATTGATTGACTGGCTTGTGGAGGTGGCTGAAGAGTATAGACTAGTACCCGATACATTGTATTTGACGGTAAACTACATTGATCGTTATCTTTCAGGAAATGTGATGAACAGACAAAGGCTACAATTACTTGGTGTTGCCTCCATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATTACTGATAACACGTACTTCAAAGAAGAGGTTTTGCAGATGGAATCTGCTGTCCTAAATTTTCTCAAGTTCGAAATGACAGCCCCAACGGTAAAATGTTTCTTAAGAAGATTTGTACGTGCTGCTCAAGGAGTCGACGAGGTCGCTTCGCTGCAACTTGAGTGCTTGACAAACTATATTGCGGAATTGTCTCTTTTGGAATACAGTATGCTTTGTTATGCTCCATCACTTATAGCCGCTTCTGCAATTTTTCTGGCCAAATTTATACTTTTCCCTTCAACGAAACCATGGAATTCCACATTGCAACATTACACGCTCTACCAGGCTTCTGATCTGTGTGTTTGCGTGAAGGATCTCCACCGCCTATGTGGTAACAGCTCTAACTCAAATTTGCCAGCAATAAGGGAGAAATATAGCCAGCACAAGTACAAATACGTGGCCAAGAAGTACTGCCCTCCTTCAATACCCCCAGAATTTTTCCTGAGTTGA 1461 0.4524 MTTHNRRSSFSSSTTSSLAKRHASTTSSSSTSSSLAAPTNVPKKRPPLSNLTNTVAHRNSSSSVPCAAKLAKTKKEVVPPFSGNKRPTLVNVKPTNAVVFPKANSLPPRNEAPPPPVVVTVTVPPPVLDVSPCKSDAMSVSMDESMSSCDSFKSPDIEYVDNSDVAAVDSIERKTFSNLNISDSTESGNICSRDILVELEKGDKFVNVDNNYADPQLCASFACDIYKHLRASEAKKRPSTDFMERIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMNRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNFLKFEMTAPTVKCFLRRFVRAAQGVDEVASLQLECLTNYIAELSLLEYSMLCYAPSLIAASAIFLAKFILFPSTKPWNSTLQHYTLYQASDLCVCVKDLHRLCGNSSNSNLPAIREKYSQHKYKYVAKKYCPPSIPPEFFLS 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10283g00007 486 SUPERFAMILY Cyclin-like 353 478 IPR036915 -
Vium10283g00007 486 SUPERFAMILY Cyclin-like 213 350 IPR036915 -
Vium10283g00007 486 ProSitePatterns Cyclins signature. 255 286 IPR006671 -
Vium10283g00007 486 CDD CYCLIN_AtCycA-like_rpt2 353 467 - -
Vium10283g00007 486 Gene3D - 224 472 - -
Vium10283g00007 486 MobiDBLite consensus disorder prediction 1 66 - -
Vium10283g00007 486 SMART cyclin_7 260 344 IPR013763 -
Vium10283g00007 486 SMART cyclin_7 357 445 IPR013763 -
Vium10283g00007 486 PANTHER CYCLINS 164 464 IPR039361 -
Vium10283g00007 486 PIRSF Cyclin_A_B_D_E 1 481 IPR046965 GO:0016538|GO:0044772
Vium10283g00007 486 Gene3D - 238 351 - -
Vium10283g00007 486 CDD CYCLIN_AtCycA_like_rpt1 214 349 - -
Vium10283g00007 486 Pfam Cyclin, N-terminal domain 224 350 IPR006671 -
Vium10283g00007 486 Pfam Cyclin, C-terminal domain 353 472 IPR004367 -
Vium10283g00007 486 SMART Cyclin_C_2 353 476 IPR004367 -
Vium10283g00007 486 FunFam Mitotic cyclin 6 238 338 - -
Vium10283g00007 486 FunFam Cyclin A1 340 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10283g00007 Vium-Chr10283 17037 20548 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10283g00007 4 484 Core Cell Cycle Gene Families AT1G44110 62.041 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10283g00007 K06627 - gmx:100789565 829.706