Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10283g00006 ATGACCACACACAATCGTCGTTCGTCGTTTTCCTCCTCGACGACGTCGTCTTTGGCGAAGCGCCATGCATCCACCACCTCTTCCTCCTCCACCTCATCCTCTTTAGCGGCTCCTACAAACGTGCCAAAGAAGCGTCCACCTCTCTCTAACCTCACCAACACCGTCGCTCACCGCAACTCGTCCTCTTCGGTCCCGTGCGCAGCTAAACTCGCGAAGACGAAGAAAGAGGTTGTTCCGCCCTTCTCAGGCAACAAAAGGCCCACGCTGGTGAATGTCAAACCTACTAATGCGGTTGTTTTTCCCAAGGCTAATTCTCTCCCTCCGAGGAACGAAGCTCCTCCTCCTCCAGTTGTTGTCACTGTTACTGTTCCGCCTCCGGTGCTGGATGTTTCACCTTGTAAATCAGATGCAATGTCGGTTTCTATGGATGAGTCGATGTCTTCTTGTGATTCGTTCAAGAGCCCTGACATTGAATATGTGGACAATAGTGATGTGGCGGCTGTTGATTCAATTGAGAGGAAAACTTTCAGCAATCTCAACATATCTGATTCTACCGAATCAGGCAACATTTGTAGTAGAGACATACTTGTTGAGTTGGAAAAAGGGGACAAGTTTGTCAATGTTGATAACAATTACGCTGATCCTCAGCTCTGTGCATCCTTTGCTTGTGATATCTACAAGCACCTTCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGACTTCATGGAGAGAATTCAGAAGGACATAAACCCCAGTATGCGTGCAATATTGATTGACTGGCTTGTGGAGGTGGCTGAAGAGTATAGACTAGTACCCGATACATTGTATTTGACGGTAAACTACATTGATCGTTATCTTTCAGGAAATGTGATGAACAGACAAAGGCTACAATTACTTGGTGTTGCCTCCATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATTACTGATAACACGTACTTCAAAGAAGAGGTTTTGCAGATGGAATCTGCTGTCCTAAATTTTCTCAAGTTCGAAATGACAGCCCCAACGGTAAAATGTTTCTTAAGATTTGTACGTGCTGCTCAAGGAGTCGACGAGGTCGCTTCGCTGCAACTTGAGTGCTTGACAAACTATATTGCGGAATTGTCTCTTTTGGAATACAGTATGCTTTGTTATGCTCCATCACTTATAGCCGCTTCTGCAATTTTTCTGGCCAAATTTATACTTTTCCCTTCAACGAAACCATGGAATTCCACATTGCAACATTACACGCTCTACCAGGCTTCTGATCTGTGTGTTTGCGTGAAGGATCTCCACCGCCTATGTGGTAACAGCTCTAACTCAAATTTGCCAGCAATAAGGGAGAAATATAGCCAGCACAAGTACAAATACGTGGCCAAGAAGTACTGCCCTCCTTCAATACCCCCAGAATTTTTCCTGAGTTGA 1458 0.4527 MTTHNRRSSFSSSTTSSLAKRHASTTSSSSTSSSLAAPTNVPKKRPPLSNLTNTVAHRNSSSSVPCAAKLAKTKKEVVPPFSGNKRPTLVNVKPTNAVVFPKANSLPPRNEAPPPPVVVTVTVPPPVLDVSPCKSDAMSVSMDESMSSCDSFKSPDIEYVDNSDVAAVDSIERKTFSNLNISDSTESGNICSRDILVELEKGDKFVNVDNNYADPQLCASFACDIYKHLRASEAKKRPSTDFMERIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMNRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNFLKFEMTAPTVKCFLRFVRAAQGVDEVASLQLECLTNYIAELSLLEYSMLCYAPSLIAASAIFLAKFILFPSTKPWNSTLQHYTLYQASDLCVCVKDLHRLCGNSSNSNLPAIREKYSQHKYKYVAKKYCPPSIPPEFFLS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10283g00006 485 PANTHER CYCLINS 164 463 IPR039361 -
Vium10283g00006 485 FunFam Cyclin A1 340 471 - -
Vium10283g00006 485 SMART cyclin_7 360 444 IPR013763 -
Vium10283g00006 485 SMART cyclin_7 260 344 IPR013763 -
Vium10283g00006 485 Pfam Cyclin, C-terminal domain 353 471 IPR004367 -
Vium10283g00006 485 ProSitePatterns Cyclins signature. 255 286 IPR006671 -
Vium10283g00006 485 SMART Cyclin_C_2 353 475 IPR004367 -
Vium10283g00006 485 PIRSF Cyclin_A_B_D_E 1 480 IPR046965 GO:0016538|GO:0044772
Vium10283g00006 485 SUPERFAMILY Cyclin-like 213 350 IPR036915 -
Vium10283g00006 485 CDD CYCLIN_AtCycA_like_rpt1 214 349 - -
Vium10283g00006 485 Pfam Cyclin, N-terminal domain 224 350 IPR006671 -
Vium10283g00006 485 Gene3D - 238 351 - -
Vium10283g00006 485 FunFam Mitotic cyclin 6 238 338 - -
Vium10283g00006 485 CDD CYCLIN_AtCycA-like_rpt2 353 466 - -
Vium10283g00006 485 Gene3D - 224 471 - -
Vium10283g00006 485 MobiDBLite consensus disorder prediction 1 67 - -
Vium10283g00006 485 SUPERFAMILY Cyclin-like 353 477 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10283g00006 Vium-Chr10283 17037 20549 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10283g00006 4 483 Core Cell Cycle Gene Families AT1G44110 61.837 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10283g00006 K06627 - gmx:100789565 823.157