Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10283g00004 ATGGATGTAGGTTGCATCATGAGCTTATTGAGGCCTTCTGCAATATACAACTTCGTAACAAGTTATCCTGCGCTGCGATGGATGCCGTGTCAGAGTTGGGGCTTCCTTCGATGGCCGGGTCTTGACGGATTCCTTAGGCTTATGGTTGTTGGACTTCTCTGGTCCACGTTTTCTGAGCTTCGCTTCATACCTTCCTCTTCTATGTTCCCCACCCTTCGTGTTGGTGATCGAATTATTGTGGAAAAGGCTTCATATTATATCAAGAATCCTTCTATACATGATATTATAACATTTAAGGATCCAACACAGATATATGGAGAAAACACAGAAACTGTTTTTATTAAGAGAATTGTAGCAAAAGCAGGAGACGCTGTTGAGGTTCATCATGGGGTACTCTACGTCAATGGTGTTGCTCAGCAGGAAGATTTCATAGCACAACCACCTGCATACACAATTCCTTTAACCACTGTGCCCAATGACCATGTTTATGTGCTAGGCGATAATCGTAATAACAGTTATGATTCTCATGTGTGGGGACCACTTCCTATGAAGAACATAATTGGAAGATATGTCACTTGTTATCATAGACCAACAAACATTTGA 603 0.4163 MDVGCIMSLLRPSAIYNFVTSYPALRWMPCQSWGFLRWPGLDGFLRLMVVGLLWSTFSELRFIPSSSMFPTLRVGDRIIVEKASYYIKNPSIHDIITFKDPTQIYGENTETVFIKRIVAKAGDAVEVHHGVLYVNGVAQQEDFIAQPPAYTIPLTTVPNDHVYVLGDNRNNSYDSHVWGPLPMKNIIGRYVTCYHRPTNI 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10283g00004 200 CDD S26_SPase_I 59 189 IPR019533 GO:0004252|GO:0006465
Vium10283g00004 200 SUPERFAMILY LexA/Signal peptidase 57 194 IPR036286 -
Vium10283g00004 200 ProSitePatterns Signal peptidases I serine active site. 65 72 IPR019756 GO:0004252|GO:0016020
Vium10283g00004 200 Gene3D Umud Fragment, subunit A 65 197 - -
Vium10283g00004 200 PRINTS Bacterial leader peptidase 1 (S26A) family signature 157 176 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium10283g00004 200 PRINTS Bacterial leader peptidase 1 (S26A) family signature 113 125 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium10283g00004 200 PRINTS Bacterial leader peptidase 1 (S26A) family signature 56 72 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium10283g00004 200 PANTHER SIGNAL PEPTIDASE I 43 198 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium10283g00004 200 Pfam Signal peptidase, peptidase S26 45 192 IPR019533 GO:0004252|GO:0006465
Vium10283g00004 200 NCBIfam signal peptidase I 47 194 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium10283g00004 200 FunFam Peptidase/ serine-type peptidase 65 194 - -
Vium10283g00004 200 ProSitePatterns Signal peptidases I signature 3. 162 175 IPR019758 GO:0004252|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10283g00004 Vium-Chr10283 3469 7656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10283g00004 68 189 MADS-box Gene Family AT1G29960 30.894 3.89e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10283g00004 K03100 - gmx:100306121 354.369