Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10283g00002 ATGAGCTTATTGAGGCCTTCTGCAATATACAACTTCGTAACAAGTTATCCTGCGCTGCGATGGATGCCGTGTCAGAGTTGGGGCTTCCTTCGATGGCCGGGTCTTGACGGATTCCTTAGGCTTATGGTTGTTGGACTTCTCTGGTCCACGTTTTCTGAGCTTCGCTTCATACCTTCCTCTTCTATGTTCCCCACCCTTCGTGTTGGTGATCGAATTATTGTGGAAAAGTTTCTCCAGGCTTCATATTATATCAAGAATCCTTCTATACATGATATTATAACATTTAAGGATCCAACACAGATATATGGAGAAAACACAGAAACTGTTTTTATTAAGAGAATTGTAGCAAAAGCAGGAGACGCTGTTGAGGTTCATCATGGGGTACTCTACGTCAATGGTGTTGCTCAGCAGGAAGATTTCATAGCACAACCACCTGCATACACAATTCCTTTAACCACTGTGCCCAATGACCATGTTTATGTGCTAGGCGATAATCGTAATAACAGTTATGATTCTCATGTGTGGGGACCACTTCCTATGAAGAACATAATTGGAAGATATGTCACTTGTTATCATAGACCAACAAACATTTGA 594 0.4158 MSLLRPSAIYNFVTSYPALRWMPCQSWGFLRWPGLDGFLRLMVVGLLWSTFSELRFIPSSSMFPTLRVGDRIIVEKFLQASYYIKNPSIHDIITFKDPTQIYGENTETVFIKRIVAKAGDAVEVHHGVLYVNGVAQQEDFIAQPPAYTIPLTTVPNDHVYVLGDNRNNSYDSHVWGPLPMKNIIGRYVTCYHRPTNI 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10283g00002 197 ProSitePatterns Signal peptidases I serine active site. 59 66 IPR019756 GO:0004252|GO:0016020
Vium10283g00002 197 FunFam Peptidase/ serine-type peptidase 59 191 - -
Vium10283g00002 197 NCBIfam signal peptidase I 41 191 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium10283g00002 197 PANTHER SIGNAL PEPTIDASE I 37 195 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium10283g00002 197 ProSitePatterns Signal peptidases I signature 3. 159 172 IPR019758 GO:0004252|GO:0016020
Vium10283g00002 197 Pfam Signal peptidase, peptidase S26 39 189 IPR019533 GO:0004252|GO:0006465
Vium10283g00002 197 Gene3D Umud Fragment, subunit A 59 194 - -
Vium10283g00002 197 CDD S26_SPase_I 53 186 IPR019533 GO:0004252|GO:0006465
Vium10283g00002 197 PRINTS Bacterial leader peptidase 1 (S26A) family signature 50 66 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium10283g00002 197 PRINTS Bacterial leader peptidase 1 (S26A) family signature 154 173 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium10283g00002 197 PRINTS Bacterial leader peptidase 1 (S26A) family signature 110 122 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium10283g00002 197 SUPERFAMILY LexA/Signal peptidase 51 191 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10283g00002 Vium-Chr10283 3469 7657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10283g00002 62 186 MADS-box Gene Family AT1G29960 28.800 3.32e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10283g00002 K03100 - gmx:100306121 348.977