Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10283g00001 ATGGATGTAGGTTGCATCATGAGCTTATTGAGGCCTTCTGCAATATACAACTTCGTAACAAGTTATCCTGCGCTGCGATGGATGCCGTGTCAGAGTTGGGGCTTCCTTCGATGGCCGGGTCTTGACGGATTCCTTAGGCTTATGGTTGTTGGACTTCTCTGGTCCACGTTTTCTGAGCTTCGCTTCATACCTTCCTCTTCTATGTTCCCCACCCTTCGTGTTGGTGATCGAATTATTGTGGAAAAGTTTCTCCAGGCTTCATATTATATCAAGAATCCTTCTATACATGATATTATAACATTTAAGGATCCAACACAGATATATGGAGAAAACACAGAAACTGTTTTTATTAAGAGAATTGTAGCAAAAGCAGGAGACGCTGTTGAGGTTCATCATGGGGTACTCTACGTCAATGGTGTTGCTCAGCAGGAAGATTTCATAGCACAACCACCTGCATACACAATTCCTTTAACCACTGTGCCCAATGACCATGTTTATGTGCTAGGCGATAATCGTAATAACAGTTATGATTCTCATGTGTGGGGACCACTTCCTATGAAGAACATAATTGGAAGATATGTCACTTGTTATCATAGACCAACAAACATTTGA 612 0.4167 MDVGCIMSLLRPSAIYNFVTSYPALRWMPCQSWGFLRWPGLDGFLRLMVVGLLWSTFSELRFIPSSSMFPTLRVGDRIIVEKFLQASYYIKNPSIHDIITFKDPTQIYGENTETVFIKRIVAKAGDAVEVHHGVLYVNGVAQQEDFIAQPPAYTIPLTTVPNDHVYVLGDNRNNSYDSHVWGPLPMKNIIGRYVTCYHRPTNI 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10283g00001 203 Gene3D Umud Fragment, subunit A 65 200 - -
Vium10283g00001 203 Pfam Signal peptidase, peptidase S26 45 195 IPR019533 GO:0004252|GO:0006465
Vium10283g00001 203 NCBIfam signal peptidase I 47 197 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium10283g00001 203 ProSitePatterns Signal peptidases I serine active site. 65 72 IPR019756 GO:0004252|GO:0016020
Vium10283g00001 203 ProSitePatterns Signal peptidases I signature 3. 165 178 IPR019758 GO:0004252|GO:0016020
Vium10283g00001 203 SUPERFAMILY LexA/Signal peptidase 57 197 IPR036286 -
Vium10283g00001 203 PRINTS Bacterial leader peptidase 1 (S26A) family signature 116 128 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium10283g00001 203 PRINTS Bacterial leader peptidase 1 (S26A) family signature 56 72 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium10283g00001 203 PRINTS Bacterial leader peptidase 1 (S26A) family signature 160 179 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium10283g00001 203 FunFam Peptidase/ serine-type peptidase 65 197 - -
Vium10283g00001 203 CDD S26_SPase_I 59 192 IPR019533 GO:0004252|GO:0006465
Vium10283g00001 203 PANTHER SIGNAL PEPTIDASE I 43 201 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10283g00001 Vium-Chr10283 3469 7658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10283g00001 68 192 MADS-box Gene Family AT1G29960 28.800 3.62e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10283g00001 K03100 - gmx:100306121 348.977