Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10277g00001 ATGTTCATGATCATGTTACCCAGCAATATCATAAAGCCAGAGAATGTTGGCTTGTCGCTCTCATACGGGTTATCATTAAACGCCGTGATGTTTTGGGCCATATACATGAGCTGTTTCATTGAAAACAAATTGGTATCTGTTGAGAGGATCAAACAGTTCACAAATATTCCATCCGAAGCAACATGGAGAAACAAGGATCGTGTGCCTCCTGCAAATTGGCCCGGTCAAGGCAATGTTGATATCAAAGATTTGCAGGTTAGATATCGTCCAAACACCCCTTTGGTTCTTAAAGGCATCACCTTAAGCATCAATGGAGGAGAAAAAGTTGGTGTTGTTGGACGAACAGGAAGTGGAAAATCAACTTTGATTCAAGTTTTCTTCAGGCTGGTGGAACCAACAGGAGGAAAAATAATAATTGATGGCATTGAAATATCTATCTTGGGACTTCATGATCTAAGATCACGGTTTGGTATAATCCCTCAAGAGCCTGTCCTTTTTGAAGGAACAGTTCGAACTAACATTGATCCAACCGGACAATATACAGACGAAGAGATATGGAAGAGTTTGGAACGCTGTCAGCTAAAAGAAGCAGTGGCTTCCAAGCCAGAGAAACTTGACTCTTCAGTGGTTGATAATGGAGATAACTGGAGTGTTGGGCAGAGACAGTTGCTTTGTTTGGGAAGGGTTATGCTTAAGCAAAGTAGGTTGTTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACCGATGCTGTGATTCAAAAGATCATCCGAGAGGACTTTGCAGCACGTACCATCATCAGCATTGCTCATAGAATACCAACAGTAATGGACTGCGATAGAATTCTAGTTGTGGACGCAGGGAGGGCCAAAGAATTTGACTCACCAGCCAACTTGGTCCAAAGGCCATCACTCTTTGTTGCTTTAGTTCAGGAGTATGCCAATCGCTCAAATGGCCTATAA 966 0.4234 MFMIMLPSNIIKPENVGLSLSYGLSLNAVMFWAIYMSCFIENKLVSVERIKQFTNIPSEATWRNKDRVPPANWPGQGNVDIKDLQVRYRPNTPLVLKGITLSINGGEKVGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIEISILGLHDLRSRFGIIPQEPVLFEGTVRTNIDPTGQYTDEEIWKSLERCQLKEAVASKPEKLDSSVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQKIIREDFAARTIISIAHRIPTVMDCDRILVVDAGRAKEFDSPANLVQRPSLFVALVQEYANRSNGL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10277g00001 321 Gene3D - 61 312 IPR027417 -
Vium10277g00001 321 CDD ABCC_MRP_domain2 77 297 - -
Vium10277g00001 321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 312 IPR027417 -
Vium10277g00001 321 SMART AAA_5 105 289 IPR003593 GO:0016887
Vium10277g00001 321 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 79 313 IPR003439 GO:0005524
Vium10277g00001 321 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 315 - -
Vium10277g00001 321 FunFam ABC transporter C family member 3 62 313 - -
Vium10277g00001 321 Pfam ABC transporter 96 244 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10277g00001 Vium-Chr10277 56878 59772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10277g00001 77 303 Calmodulin-binding Proteins AT2G36910 30.435 3.63e-33 127