Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10273g00012 ATGCTCAGTTTACACATCCCTTTCCCCAAAACCCATCCTGCACCCTCACAAATGGAGTATGAAGATGAAGATTGGTTATGTGTAACTATGGAAGAGTTTTCTCTTGCTACTGAAAATGGTTCTAGCAAGCAAGGGATAGGTCGGAAGAGAAACTATGATGATGGCACCAGAGAGTTCAAATCAAAGAACCTAGAAACGGAAAGAAGGAGGAGGGAGAAGCTCAGTAGCAGACTCTTGATGCTTCGTGCTATAGTGCCTATCATCACAAATATGAACAAAGCCACAATTATTGAAGATGCTATCACCTACATTGAGAAGCTTCAAGACAAAGTCCAGAGTCTCAGTCAAGAGCTTCACCAAATGGAAACAACTTCAGAGGAAACAGGAAACACAACAGATGAAATTGATGCTGCACAAGATATGAAGGATTTGGGAATACAGGAAGAAGTTAGGGTGGCACAAATAGACGGAAATAAACTCTGGGTTAAGATCATCATTCAGAAGAGAAAAGGAAGATTCAGAAAATTGATGGAAGCTCTCAATAATTTCAGCATTGAACTCATAGACACCAATCTCACAACCACAAAAGGAGCATTTCTTATTTCAAGCTGTATACAGGACAGAGATGGTGAAAAACTTGAAATTCAACAAACCAAGGATTTGTTGCAAGACATTATCAATGGCATATAG 690 0.3957 MLSLHIPFPKTHPAPSQMEYEDEDWLCVTMEEFSLATENGSSKQGIGRKRNYDDGTREFKSKNLETERRRREKLSSRLLMLRAIVPIITNMNKATIIEDAITYIEKLQDKVQSLSQELHQMETTSEETGNTTDEIDAAQDMKDLGIQEEVRVAQIDGNKLWVKIIIQKRKGRFRKLMEALNNFSIELIDTNLTTTKGAFLISSCIQDRDGEKLEIQQTKDLLQDIINGI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10273g00012 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 124 IPR036638 GO:0046983
Vium10273g00012 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 58 107 IPR011598 GO:0046983
Vium10273g00012 229 SMART finulus 64 113 IPR011598 GO:0046983
Vium10273g00012 229 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 41 223 - -
Vium10273g00012 229 Coils Coil 97 124 - -
Vium10273g00012 229 Gene3D - 51 124 IPR036638 GO:0046983
Vium10273g00012 229 Pfam Helix-loop-helix DNA-binding domain 62 108 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10273g00012 Vium-Chr10273 48459 49674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10273g00012 59 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 46.893 8.21e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium10273g00012 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10273g00012 - - vum:124819567 441.81