Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10273g00007 ATGTTTGAGGCTTGGCTTTCTCTCAAGAAGACCCTTCAGTGCAAGCCACACCCAAATCATGTTCATGATCCAAACACTATTAGGCAGCAAAAAGGTAATCAGAGAACAAAGTTGGGCAATCTTAAGAATTCAAATACCAAAGATTTCATCCATGGAAGCAACAGGCACTCTAAAAATCCCCTGAGTTTTAAAGGAGACATTGAGATCACTGGTCCTATAATCGACGAAATCACTCTTGATAGCTCAAACCATGAAACTAGTCGACGTTTTTCTTGTCCTCAAAGAAACAGCAGCAATAAAACTTCTCACAGAACACGAAGGTCAGATACATATTCGAAGATAGCATATCCTCTAGATCAGAATGAAGCAAATGTGTTCTCCAATACAAGGACTTTGGTTGGGATGGATTCTGATGTCTTTTCATCATTGACATGTGATAAATGTGGCGAGAAATTAAAAAACCCTGTTGCTGTAGAAGCACACAATATCTCCGATCATTCAGTGATTGAGCTTGAGGAAGATTCGTCGAGACAGATCATAGAAACAATATGTGGAACAAGCTCGGTTTACTCTGAAAGCATGTTGGGTGAGATTGACTGCATCTTAAAGGTTGTGAATATACCAAAAACCTTTGCTTGCTTTGAAGAGTATAGAGAAAAGGTGAAGGAAAAGGCTGACAGACAAAAGAAAAAACACCCTCGTTGTGTGGCTGATGGAAACGAACTTTTAAGGTTCCACGGCACAACAATTGCATGCTCTCTGGGCATAAACAGCTGTTATAGGCTGTGCACTTTAGACTATTGTGGTATATGTCAAATTCTGAGACATGGGTTTTCGACCAACAAGGAATTCAAAGGTGCATTGGGGGTTTACACAACTTCCACGAGTGGGAAAGCCTTTGAATCCATTTCCATAATGACATCCCATGAGAGACCATTTTCGAGAAAGTCCATCATAGTGTGCAGAGTAATAGCTGGGAGAATTTGTAGCCCTCTTGAAGGAATTGAAGAAAGGGGTGATTCATTGGCAGAAAAGATAAATGGGCATTCAGATGTTGAAGAACTGTATGTGTTAAATCCCAGAGCCCTTCTTCCTTGCTTTGTAGTAATCTACAAACAGCAAACAGCCAAGTTTAGAAGGGTCGGCCCAAGCTTAAGGATAGGTAGCTTTTAA 1173 0.4049 MFEAWLSLKKTLQCKPHPNHVHDPNTIRQQKGNQRTKLGNLKNSNTKDFIHGSNRHSKNPLSFKGDIEITGPIIDEITLDSSNHETSRRFSCPQRNSSNKTSHRTRRSDTYSKIAYPLDQNEANVFSNTRTLVGMDSDVFSSLTCDKCGEKLKNPVAVEAHNISDHSVIELEEDSSRQIIETICGTSSVYSESMLGEIDCILKVVNIPKTFACFEEYREKVKEKADRQKKKHPRCVADGNELLRFHGTTIACSLGINSCYRLCTLDYCGICQILRHGFSTNKEFKGALGVYTTSTSGKAFESISIMTSHERPFSRKSIIVCRVIAGRICSPLEGIEERGDSLAEKINGHSDVEELYVLNPRALLPCFVVIYKQQTAKFRRVGPSLRIGSF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10273g00007 390 Gene3D - 165 377 - -
Vium10273g00007 390 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 5 371 - -
Vium10273g00007 390 MobiDBLite consensus disorder prediction 23 48 - -
Vium10273g00007 390 MobiDBLite consensus disorder prediction 85 99 - -
Vium10273g00007 390 MobiDBLite consensus disorder prediction 17 64 - -
Vium10273g00007 390 SUPERFAMILY ADP-ribosylation 233 374 - -
Vium10273g00007 390 MobiDBLite consensus disorder prediction 85 109 - -
Vium10273g00007 390 ProSitePatterns Zinc finger C2H2 type domain signature. 145 166 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10273g00007 Vium-Chr10273 16471 18127 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10273g00007 4 372 C2H2 Transcription Factor Family AT5G54630 41.203 6.45e-91 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10273g00007 - - gmx:100807216 562.377