Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10273g00001 ATGGCGCAGAAGCAGAAGCGTCCTTCCCCTCTGGATGAGCCACCCACGGCTTCTTCTTCAGATTCCGAGGAAGAAGAAACGCAAAAACCATCTTCTCTGCGGCATGGAAACGAAGAGGAAGAAGCTTCGTCGGGAGAAGATGAAGAATCCTCTGGAGAAGAGGCAGAAGATGACGATCTTCCACCACCCATCACCAAAACCAACCCTCCACCCGCTCCCACGAACCCTCATCCCGAATCCGCATCTTCTGATTCCGAAACAGAATCCGAATCAGAGACCGAGTCGGAAACTGAATCCCCTCCTGCGAAGGCGGTAAAGCCTCTCGCGACAAAGCCCATGGACCAGGCCCAAAAGCCCAAGGCCCTACCTTCTCCGGCGCCACCCAAACCGGCTGTGAAACGCGCCGCCGAGAACAGCAACGCCCACGTCGCGAAGAAAAAGAAGAAATCCGGCGATTCTTCTTCTTCCCCTGCCGCTTCCGACGAAGAGATGGAGGAAGGGAAGAAGTCCGGCGATCAAATGAAGAAGTTTCAGAGGCTGTGGAGCGAGGAGGACGAACTCGCCATTCTCAAGGGCTTGGCCGAGTTCACCTCCAAAACAGGGAACGACCCTCTTAAGTTTGCGGGTGGCAATGCTTTCCATGATTTCTTGAAGAAGTCGCTGCATGTGGAAGTTACCAGCAACCAGCTGAAGGAGAAGGCTCGGAGACTAAAGAAGAAGTATGAGATCGCTGCAGTGAGAGGGAATAGCGCTGATGGCCTTATATTTGCAAAGCCGCACGATCAGAAAACGTTTGAATTGTCGAAAAAGGTTTGGGGAAGTGAGCAAGATGGTGGAGTGGCCAATGGGGCAGTGGAAAAGCCCAAGGCTAACGGGAATGCTGCTAAGAGTCCGAAGAAGAAGGAAACCGGTAGCAGGAATGTGGCTTCTGCCAAGAAAACTAAACCTGAACCGAAACAGGAGACGGTGCCAGCGACGCGCATGGAGTTCAAGGAATCTGAAAAGATGCATATCGATCAAAAGACTGTTAATTGTGAAGTGAGTATGTTTTTGCATGCATTGTCCCACTTTAAAGAGGGTCTGGGTGTTTGTGGGTTGGACGAGGAGGATGTGAAGAAGGGGTTGGAATTGATTGGTGAATCGAAGAGGACAGAGTTGAGGGCAAAGTGGAAGAAATTACAACGTACTGAATTGGAACTTTTTGCTAATCGCTCAGAACTGATTGGGGAGCAAACTAAATTGATAGTTGAGGCACTTCGGTCGTCCAACCATTAG 1275 0.5082 MAQKQKRPSPLDEPPTASSSDSEEEETQKPSSLRHGNEEEEASSGEDEESSGEEAEDDDLPPPITKTNPPPAPTNPHPESASSDSETESESETESETESPPAKAVKPLATKPMDQAQKPKALPSPAPPKPAVKRAAENSNAHVAKKKKKSGDSSSSPAASDEEMEEGKKSGDQMKKFQRLWSEEDELAILKGLAEFTSKTGNDPLKFAGGNAFHDFLKKSLHVEVTSNQLKEKARRLKKKYEIAAVRGNSADGLIFAKPHDQKTFELSKKVWGSEQDGGVANGAVEKPKANGNAAKSPKKKETGSRNVASAKKTKPEPKQETVPATRMEFKESEKMHIDQKTVNCEVSMFLHALSHFKEGLGVCGLDEEDVKKGLELIGESKRTELRAKWKKLQRTELELFANRSELIGEQTKLIVEALRSSNH 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10273g00001 424 MobiDBLite consensus disorder prediction 63 77 - -
Vium10273g00001 424 PANTHER BNAANNG10740D PROTEIN-RELATED 69 418 IPR007592 GO:0006355
Vium10273g00001 424 MobiDBLite consensus disorder prediction 1 176 - -
Vium10273g00001 424 MobiDBLite consensus disorder prediction 293 325 - -
Vium10273g00001 424 MobiDBLite consensus disorder prediction 42 58 - -
Vium10273g00001 424 MobiDBLite consensus disorder prediction 22 41 - -
Vium10273g00001 424 MobiDBLite consensus disorder prediction 276 325 - -
Vium10273g00001 424 MobiDBLite consensus disorder prediction 161 176 - -
Vium10273g00001 424 Pfam Protein of unknown function, DUF573 177 273 IPR007592 GO:0006355
Vium10273g00001 424 Coils Coil 227 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10273g00001 Vium-Chr10273 3203 4707 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10273g00001 105 421 GeBP Transcription Factor Family AT4G25210 31.737 1.90e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vium10273g00001 DUF573 2.8e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10273g00001 - - gmx:100791520 449.899