Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1026g00051 ATGGGAGTTTCATGGAGTAACAATAACAGAAGAAGAAGAAGAAGCACCTACTTTCATCCTCATCCTCATCCTCCACATCTCCCACCACCTTACTATTATCCTCCGCCGCTTCTGCCACCACCAGCACCGCCTCCACAAGGTTACTTTATCACCTCATCCAACCCTTCTGCTTCTACCTCTGCCGCCACAGGCTATGTGGGTCCTCCTCCTCAGTATTACCCAAATGTCTACACTGCCAATTCTGTGATGCTTCATCAGCAGCCCTTGTATGCAAATGAGGGGGGAAACGATATTCACCTTTCGCCGCCACCCTATGTCGATCATCAAACCACTAAGAAGATAAGGAACGATGTCAATTTGCATAAACACACGCTACACCTCTGCATAGATCCTAACAATCCAGATCACCACTTGATTTCCTTTGATTTCGATGCCCTCTTTGATGGCAGCATTACTATCTTCTACTTAGCCAAAGAAGAAGAAAATTGTAGGTTTAATCCACTGTTTCCTGATTTGTTTGAGCCAATCACATTCCCCTTTCAAAAAGGGACTGGCCAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGACCTAGGCTTTTTTGAGTTGGATGATCTTTCTCGACCCTCACCCGGAGAAGATGTATTTCCCCTTGTCATATGTGCTGAAACTAATAGTATTTCTGGACTGGATGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTAGAAAAAAGCAACGGTGTTGGTCCTTTCCAAGTAAAAGTAGTTAGGCAGATTCTGTGGATTGATGATGTTCGTTATGAGCTCAGAGAGTTATATGGAATAGGAAGTTCAGCAACAGCAGATTTTGATGATAATGGAAAGGAGTGTGTAATATGCATGACTGAACCCAAGGACACTGCTGTCTTGCCCTGCCGACATATGTGCATGTGCAGTGAGTGTGCTAAAGCTTTGCGGTTTCAATCAAATAAGTGTCCTATATGCCGTCAACCTATTGAGGAACTTATAGAGATCAGGATAAACGTTGGCAATCAATGA 1041 0.439 MGVSWSNNNRRRRRSTYFHPHPHPPHLPPPYYYPPPLLPPPAPPPQGYFITSSNPSASTSAATGYVGPPPQYYPNVYTANSVMLHQQPLYANEGGNDIHLSPPPYVDHQTTKKIRNDVNLHKHTLHLCIDPNNPDHHLISFDFDALFDGSITIFYLAKEEENCRFNPLFPDLFEPITFPFQKGTGQKFCQPSGTGIDLGFFELDDLSRPSPGEDVFPLVICAETNSISGLDASPHMQITQAVLEKSNGVGPFQVKVVRQILWIDDVRYELRELYGIGSSATADFDDNGKECVICMTEPKDTAVLPCRHMCMCSECAKALRFQSNKCPICRQPIEELIEIRINVGNQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1026g00051 346 SUPERFAMILY RING/U-box 290 336 - -
Vium1026g00051 346 PANTHER MAHOGUNIN 45 340 IPR045194 GO:0061630
Vium1026g00051 346 ProSiteProfiles Zinc finger RING-type profile. 291 330 IPR001841 -
Vium1026g00051 346 FunFam probable E3 ubiquitin-protein ligase LOG2 276 340 - -
Vium1026g00051 346 CDD mRING-HC-C3HC5_MGRN1-like 289 330 IPR045195 -
Vium1026g00051 346 SMART ring_2 291 329 IPR001841 -
Vium1026g00051 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 340 IPR013083 -
Vium1026g00051 346 MobiDBLite consensus disorder prediction 1 25 - -
Vium1026g00051 346 Pfam Zinc finger, C3HC4 type (RING finger) 289 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1026g00051 Vium-Chr1026 253562 256259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1026g00051 105 346 C3H Transcription Factor Family AT3G06140 63.454 3.87e-105 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1026g00051 - - gmx:102665712 525.013