Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1026g00047 ATGAGCACCTCAGCGGCTATAGAACAATTTGACAAATGCATGAATGGGCAAATAGAAGTTATCGCACGGGTTTGGCATTTATTTCAAGCCTACAAAAAGGACAAAAGTCCTTTCAAAATAGATGAGGGTCTGTATTTGGGTTCGATTGGCACTGCAGTTAACAAAGCTTCTTTGAAAGACCATAATATTACTCACATTTTGACTGTGGCTGGTAGAATACCACCTGCACATCCTGATGATTTTGTCTATAAAATTATACATGTTGTTGACAAAGACGATGAAGACTTAAGACAATACTTCAATGAGTGTTTTGATTTTATTGATGAAGCCAAAAGACTCGGTGGAGGTGTTTTGGTTCACTGTTTCGCTGGAAGATCAAGGAGTGTGACTATAGTTGTTGCATATCTGATGAGGACTCGTGGAATGAGCCTTTCTGAAGCTCTGCAACATGTAAGGAGTATACGACCAGAAGCACGTCCCAATCAGGGTTTTATTTGTCAGCTGGAGGACTTCGAAAAGTCTCTTCAAGGTGCCTCTAAGTCACTTTAG 549 0.4026 MSTSAAIEQFDKCMNGQIEVIARVWHLFQAYKKDKSPFKIDEGLYLGSIGTAVNKASLKDHNITHILTVAGRIPPAHPDDFVYKIIHVVDKDDEDLRQYFNECFDFIDEAKRLGGGVLVHCFAGRSRSVTIVVAYLMRTRGMSLSEALQHVRSIRPEARPNQGFICQLEDFEKSLQGASKSL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1026g00047 182 SMART dsp_5 36 174 IPR020422 GO:0006470|GO:0008138
Vium1026g00047 182 Gene3D Protein tyrosine phosphatase superfamily 29 181 IPR029021 -
Vium1026g00047 182 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 35 179 IPR029021 -
Vium1026g00047 182 FunFam Dual specificity phosphatase 12 38 181 - -
Vium1026g00047 182 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 98 156 IPR000387 GO:0016311|GO:0016791
Vium1026g00047 182 ProSiteProfiles Dual specificity protein phosphatase domain profile. 36 177 IPR020422 GO:0006470|GO:0008138
Vium1026g00047 182 CDD DSP 37 170 - -
Vium1026g00047 182 Pfam Dual specificity phosphatase, catalytic domain 44 173 IPR000340 GO:0008138|GO:0016311
Vium1026g00047 182 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 36 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1026g00047 Vium-Chr1026 216627 219503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1026g00047 39 177 Protein tyrosine phosphatase (PTP) family AT3G06110 60.432 1.09e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1026g00047 - - gmx:100306342 305.064