Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1026g00046 ATGGAGTATGTCACACGAAGTAGCCATTCTGAAATATCTCTCGGTAACTCCTTTGGGGTCTCCTTTTCATATACCTCATCCAAAATGCTGGGATCGAGAATGAGCACCTCAGCGGCTATAGAACAATTTGACAAATGCATGAATGGGCAAATAGAAGTTATCGCACGGGTTTGGCATTTATTTCAAGCCTACAAAAAGGACAAAAGTCCTTTCAAAATAGATGAGGGTCTGTATTTGGGTTCGATTGGCACTGCAGTTAACAAAGCTTCTTTGAAAGACCATAATATTACTCACATTTTGACTGTGGCTGGTAGAATACCACCTGCACATCCTGATGATTTTGTCTATAAAATTATACATGTTGTTGACAAAGACGATGAAGACTTAAGACAATACTTCAATGAGTGTTTTGATTTTATTGATGAAGCCAAAAGACTCGGTGGAGGTGTTTTGGTTCACTGTTTCGCTGGAAGATCAAGGAGTGTGACTATAGTTGTTGCATATCTGATGAGGACTCGTGGAATGAGCCTTTCTGAAGCTCTGCAACATGTAAGGAGTATACGACCAGAAGCACGTCCCAATCAGGGTTTTATTTGTCAGCTGGAGGACTTCGAAAAGTCTCTTCAAGGTGCCTCTAAGTCACTTTAG 648 0.4074 MEYVTRSSHSEISLGNSFGVSFSYTSSKMLGSRMSTSAAIEQFDKCMNGQIEVIARVWHLFQAYKKDKSPFKIDEGLYLGSIGTAVNKASLKDHNITHILTVAGRIPPAHPDDFVYKIIHVVDKDDEDLRQYFNECFDFIDEAKRLGGGVLVHCFAGRSRSVTIVVAYLMRTRGMSLSEALQHVRSIRPEARPNQGFICQLEDFEKSLQGASKSL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1026g00046 215 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 68 212 IPR029021 -
Vium1026g00046 215 SMART dsp_5 69 207 IPR020422 GO:0006470|GO:0008138
Vium1026g00046 215 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 131 189 IPR000387 GO:0016311|GO:0016791
Vium1026g00046 215 ProSiteProfiles Dual specificity protein phosphatase domain profile. 69 210 IPR020422 GO:0006470|GO:0008138
Vium1026g00046 215 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 52 209 - -
Vium1026g00046 215 Gene3D Protein tyrosine phosphatase superfamily 62 214 IPR029021 -
Vium1026g00046 215 CDD DSP 70 203 - -
Vium1026g00046 215 FunFam Dual specificity phosphatase 12 71 214 - -
Vium1026g00046 215 Pfam Dual specificity phosphatase, catalytic domain 77 206 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1026g00046 Vium-Chr1026 214496 219503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1026g00046 72 210 Protein tyrosine phosphatase (PTP) family AT3G06110 60.432 2.50e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1026g00046 - - gmx:100306342 305.064