Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1026g00029 ATGGAACTTTCGAGTCAAGAAGGAGAAATCCCAATCCCAATAAACAGCACTACTTATGGTGGGGGACACGGTAATGGACACGGTCATGGTCTCATGATTCACCATGACCCTCCACACCACAACCACATTATCTCCTCCACGGCTCCTACGAACGGCACACCCACTATGCATCAGGAGGATCATGGGTACAAGAAAGCGGTGAGATACAGAGAATGCCTGAAGAACCATGCAGCGGCCATGGGAGGGAATGCCACTGATGGATGCGGCGAGTTCATGCCGAGTGGAGAAGAGGGCACCATAGAGGCACTGAACTGCTCGGCCTGCCATTGTCACAGAAACTTCCACAGAAAGGAAGTGGAGGGTGAGCCGTCTTCGTGTGACTACCACCCCTTCAACAGAAGAAGACTGATTCTGGGCCCTCACAAGAACCTCCTCCCTCCCGAGGCTCTTGGCTACCCTACGGGTAACATCCTTCCTTCTAGAAGTGTCCCACCACACCAGATGATAATGCCCTACAGCATTGGTCACCTCCCTTCAGAGTCTGATGAACAAGAAGACGGTGGAGGAATGGTGCAGCCTAGACCCTCCCAGCTAGTGAAGAAAAGGTTCAGGACAAAGTTCACCCAGGAGCAGAAGGAGAAAATGCTCAACTTTGCTGAGAGGGTTGGCTGGAAAATCCAGAAACAAGAAGAGTCCGTGGTGCAACAGTTCTGCCAAGAGATTGGGGTCAAGCGAAGAGTGCTCAAGGTTTGGATGCACAACAATAAGCACAATCTCGCCAAAAAGAATCCTCCTACTGCAGCAGCTTAA 810 0.5136 MELSSQEGEIPIPINSTTYGGGHGNGHGHGLMIHHDPPHHNHIISSTAPTNGTPTMHQEDHGYKKAVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCSACHCHRNFHRKEVEGEPSSCDYHPFNRRRLILGPHKNLLPPEALGYPTGNILPSRSVPPHQMIMPYSIGHLPSESDEQEDGGGMVQPRPSQLVKKRFRTKFTQEQKEKMLNFAERVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNPPTAAA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1026g00029 269 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 68 119 IPR006456 -
Vium1026g00029 269 SUPERFAMILY Homeodomain-like 193 261 IPR009057 -
Vium1026g00029 269 Pfam ZF-HD protein dimerisation region 67 119 IPR006456 -
Vium1026g00029 269 NCBIfam homeobox domain, ZF-HD class 200 256 IPR006455 -
Vium1026g00029 269 MobiDBLite consensus disorder prediction 1 22 - -
Vium1026g00029 269 Gene3D - 189 262 - -
Vium1026g00029 269 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 54 259 - -
Vium1026g00029 269 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 118 IPR006456 -
Vium1026g00029 269 FunFam Zinc-finger homeodomain protein 2 190 261 - -
Vium1026g00029 269 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1026g00029 Vium-Chr1026 143437 145882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1026g00029 1 263 ZF-HD Transcription Factor Family AT1G14440 49.169 8.62e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium1026g00029 ZF-HD_dimer 2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1026g00029 - - gmx:100805652 445.277