Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1026g00024 ATGGAAGGAGTACCGCACCCAGTACCCAGAACTGTCGAAGAGGTTTTCACCGACTTTAAGGGCAGACGCTCCGGTTTGATCAAGGCCCTCACCACCGACGTTGAAAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAATCTGTGTCTATATGGGTTTCCAAATGAAACTTGGGAAGTAAATTTGCCTGTCGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATAAACTTTGCCAGGGATGGCATGCAAGAGAAGGACTGGCTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTTGCTGTTGCTTTTTACTTTGGTGCCCGATTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACAATCTTCGAACTTGTGACTGGAAGTGTTAAGCAATCAAAGGATCAACCAGCTGCTCACAACAATGGTAGCAAATTCAAATCGAGTGGAAAGTCCCGTCAGTCTGAATCTCAAGCCAAGGGGATGAAGATGTCTGCACCACCTAAAGAGGAGGATGATAGCGGAGAGGAAGAAGAAGAAGATGACGAACAAGGTGCAACATGTGGTGCTTGCGGTGATAATTATGGCACTGATGAATTCTGGATCTGTTGTGATATGTGTGAAAGATGGTTCCATGGTAAATGTGTTAAAATCACTCCCGCTAAGGCTGAGCACATCAAGCAATACAAGTGCCCTAGCTGCAGTAACAAGAGGGTTAGAGTTTGA 759 0.4559 MEGVPHPVPRTVEEVFTDFKGRRSGLIKALTTDVEKFYQQCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFELVTGSVKQSKDQPAAHNNGSKFKSSGKSRQSESQAKGMKMSAPPKEEDDSGEEEEEDDEQGATCGACGDNYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRVRV 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1026g00024 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 247 IPR013083 -
Vium1026g00024 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Vium1026g00024 252 MobiDBLite consensus disorder prediction 144 172 - -
Vium1026g00024 252 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Vium1026g00024 252 PANTHER CPG BINDING PROTEIN 9 251 IPR045104 GO:0006355|GO:0042393
Vium1026g00024 252 FunFam PHD finger alfin-like protein 191 247 - -
Vium1026g00024 252 Pfam PHD-finger 199 248 IPR019787 -
Vium1026g00024 252 SMART PHD_3 198 246 IPR001965 -
Vium1026g00024 252 MobiDBLite consensus disorder prediction 144 197 - -
Vium1026g00024 252 MobiDBLite consensus disorder prediction 182 197 - -
Vium1026g00024 252 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Vium1026g00024 252 CDD PHD_AL_plant 199 248 IPR044104 -
Vium1026g00024 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1026g00024 Vium-Chr1026 95382 102243 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1026g00024 1 249 Alfin-like Transcription Factor Family AT1G14510 80.723 1.33e-134 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vium1026g00024 Alfin 2e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1026g00024 K26274 - gmx:100807826 484.567