Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1026g00020 ATGAGCAGACTTGTTTTCGGCCTTCAGATTCAGAGTTATTACCCTCAGTCATTTAAATCCATTAAGAACATAATAGCTCATGAAATCCAGGTCTGTTGTAGTGGATGTTGGAGTGGGGCAAATCATGTGGTACCTGTTGCAGATGGCTACGTTATAGGTAGCAGTATCAAACGATTCCTGAAAGAGGACAGAAAGTACCACCAGAAGACTCTTGTGAATCAAAGGAGTTCAATAGCTGATAAAGAACCAGGCAAGTACATCAAGCATTGGAGAGGTATTAAACCGAAGACAGGGGCACCATATTCATGTGATATTGGCATTGAACGATTTTTGGTCCGAGGGAATATAGTTCTGTCTGGAGGTTCAAGCATGTTTCAAGGATTTCACAGGAGGTTGCAACGTGATCTTAAAAAAATAGTGGATGCTCGTTCACAGCCAGTGGAGGTAAATGTACTCAGCCATCCAATCCAGAGATTTGCAGTTTGGTTTGGAGGATCGGTACTTGCATCAACACCTGAATTTTTTACGTTCAAAGAGATTCCATTTTGTACGAATGCGAGTTTGGCATGTGTTAATGGAAATAAAGGTGGTTCTGGAACCATTGTGCTGTATCCATTTGTTATTGGAAAGGAGGTTCTGGAACCTTGTGCATATTCATAA 660 0.4121 MSRLVFGLQIQSYYPQSFKSIKNIIAHEIQVCCSGCWSGANHVVPVADGYVIGSSIKRFLKEDRKYHQKTLVNQRSSIADKEPGKYIKHWRGIKPKTGAPYSCDIGIERFLVRGNIVLSGGSSMFQGFHRRLQRDLKKIVDARSQPVEVNVLSHPIQRFAVWFGGSVLASTPEFFTFKEIPFCTNASLACVNGNKGGSGTIVLYPFVIGKEVLEPCAYS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1026g00020 219 Pfam Actin 101 174 IPR004000 -
Vium1026g00020 219 Gene3D - 26 168 - -
Vium1026g00020 219 PANTHER ACTIN 102 179 IPR004000 -
Vium1026g00020 219 SUPERFAMILY Actin-like ATPase domain 39 175 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1026g00020 Vium-Chr1026 80995 83663 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1026g00020 27 174 Cytoskeleton Gene Families AT5G09810 29.730 2.59e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1026g00020 K18584 - cpap:110817130 174.096