Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1026g00019 ATGGTTATGCCCGGTTTTCGCTTCCATCCAACTGAAGAAGAGCTCGTCGAATTCTACCTTCGCCGTAAGGTGGAGGGAAAGCGTTTCAACGTTGAACTCATTACTTTCCTCGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCGTTGGCGGCTATTGGGGAGAAGGAGTGGTACTTCTATGTGCCGAGAGATAGAAAGTATCGAAACGGTGATCGTCCCAATCGTGTCACCACCTCTGGGTATTGGAAGGCGACGGGAGCTGATAGGATGATCCGAACGGAGAATTTTCGGTCAATCGGCCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCCAAAGGCATACGAACTAGTTGGATTATGAACGAGTATCGGTTGCCGCAACACGAAACCGAACGATATCAAAAGGCTGAGATATCGCTTTGCCGCGTGTACAAGAGAGCTGGAGTAGAGGATCATCCCTCCCTCCCTCGCTGTCTCCCAACAAGGCCCTCTTCATCAAGAGCTTCTTCGCACTCCGAAACCAAGAAGCACAACGAGTTGGTTCATCACAACATGGGATTTGTGGGACAATCGAAGCCAACCGAACACATAGTTGACAAAATGAATGAAACGGAAGCAAGCAGTGATGTCAACACGGCTCTTGGACTTTCGAAATACAATGCTTACCGTGCTGCGATGGGTGCACTCAGCAGCACAATGGCACTTCCGGTTGTTCCGATGGACGAGGAAGGGCTGATGATGATGCAGCATCAGCAGCAGTCTAAGCAAGCGGCAGCACACGCAGGTGCTCCTGGGATTGGCACAATCTTCTCTGCTGGACCTTCTAGTTCCAATAACAATGGAGTGGTGAACATGGATGATCTGAATAGGCTAGTGAGTTACCAGCAGCAGTTCTACAATGTTCAAAGCCATCCCAATCAGTTCTCTACTCTGCTGATGCAACCATCACCAGTAGTGTCTCTCAGCTCGCTACCAAATCCACTTCCAACCACCTTCTCTGACCGACTGTGGGAGTGGAATCCAATCCCAGAGCCACCAAATCAAGAGTACAGCAACATGTCCTTCAAGTAA 1080 0.4935 MVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSRASSHSETKKHNELVHHNMGFVGQSKPTEHIVDKMNETEASSDVNTALGLSKYNAYRAAMGALSSTMALPVVPMDEEGLMMMQHQQQSKQAAAHAGAPGIGTIFSAGPSSSNNNGVVNMDDLNRLVSYQQQFYNVQSHPNQFSTLLMQPSPVVSLSSLPNPLPTTFSDRLWEWNPIPEPPNQEYSNMSFK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1026g00019 359 ProSiteProfiles NAC domain profile. 2 149 IPR003441 GO:0003677|GO:0006355
Vium1026g00019 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 239 - -
Vium1026g00019 359 SUPERFAMILY NAC domain 3 148 IPR036093 GO:0003677|GO:0006355
Vium1026g00019 359 MobiDBLite consensus disorder prediction 155 178 - -
Vium1026g00019 359 Gene3D NAC domain 11 152 IPR036093 GO:0003677|GO:0006355
Vium1026g00019 359 Pfam No apical meristem (NAM) protein 4 128 IPR003441 GO:0003677|GO:0006355
Vium1026g00019 359 FunFam NAC domain-containing protein 35 11 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1026g00019 Vium-Chr1026 75154 77579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1026g00019 1 177 NAC Transcription Factor Family AT5G39820 49.020 2.28e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium1026g00019 NAM 3.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1026g00019 - - vum:124824712 691.804