Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1026g00013 ATGGCCACTGAGAATAAGCTGAAGCTGTATTCACACTGGATAAGCTCCTGTTCCTTCCGAGTCCGATTTGCTCTCAACCTCAAAGGACTACCTTACGATTATCAAATAGTCACCACATTTTCTGATCCCGAGTTTCTCAAGCTCAACCCTATTGGATTTGTCCCTGTGCTGGTGGATGGCGATTCAGTAATTGCTGACTCTTTTGCCATTATTATGTACTTGGAGGATAAGTATCCTCACCCTCCTTTGCTTCCTCATGACATTCTCAAAAGAGCAATCAATTTCCAGGCTGTCACCATTGTTTCCTCATCTATACAACCTTTTCAAAACTATACTGTTGTGAAGTATATAGGGGAAAAAATCGGCCCTGATGAAAAACTTCCTTGGACCCAACGTGTAATAGGAAAAGGCTTTACGGCACTTGAAAAACTGTTGAAAAACCATGCAGGAAGATATGCAACTGGAGATCAAATTTTCCTGGCAGATATGTTTTTAGCACCTCAGTTAGATGCAGCAATTAGGAGATTCAACGTTGACATGAAGGAATTCCCTACTCTATCAAGATTACATGAGGCATATAATGAAATCCCAGCATTTCGGGAGGCTTTGCCAGAGAACCAACCAGATGCAGTTCATTAG 639 0.4163 MATENKLKLYSHWISSCSFRVRFALNLKGLPYDYQIVTTFSDPEFLKLNPIGFVPVLVDGDSVIADSFAIIMYLEDKYPHPPLLPHDILKRAINFQAVTIVSSSIQPFQNYTVVKYIGEKIGPDEKLPWTQRVIGKGFTALEKLLKNHAGRYATGDQIFLADMFLAPQLDAAIRRFNVDMKEFPTLSRLHEAYNEIPAFREALPENQPDAVH 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1026g00013 212 Gene3D - 86 212 - -
Vium1026g00013 212 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 212 IPR010987 -
Vium1026g00013 212 SFLD Glutathione Transferase (cytosolic) 7 193 IPR040079 -
Vium1026g00013 212 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 82 IPR004045 -
Vium1026g00013 212 Gene3D Glutaredoxin 4 85 - -
Vium1026g00013 212 FunFam Zeta class glutathione transferase GSTZ1 5 84 - -
Vium1026g00013 212 SUPERFAMILY Thioredoxin-like 5 85 IPR036249 -
Vium1026g00013 212 NCBIfam maleylacetoacetate isomerase 8 210 IPR005955 GO:0003824|GO:0005737|GO:0009072
Vium1026g00013 212 CDD GST_C_Zeta 90 207 IPR034330 -
Vium1026g00013 212 FunFam Maleylacetoacetate isomerase 86 212 - -
Vium1026g00013 212 SUPERFAMILY GST C-terminal domain-like 82 210 IPR036282 -
Vium1026g00013 212 Pfam Glutathione S-transferase, N-terminal domain 9 82 IPR004045 -
Vium1026g00013 212 SFLD Main (cytGST) 7 193 - -
Vium1026g00013 212 Pfam Glutathione S-transferase, C-terminal domain 127 200 IPR004046 -
Vium1026g00013 212 PANTHER MALEYLACETOACETATE ISOMERASE 7 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1026g00013 Vium-Chr1026 24482 28682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1026g00013 4 209 Glutathione S-transferase Gene Family AT2G02380 60.000 3.16e-90 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1026g00013 K01800 - gmx:100526991 362.844