Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1026g00002 ATGACAGAGGGTAGCAATCCAATATCTCCGGTGGACGGCATGGACGTGACCGGCGGCAGCAAAGAGCAGCAGGCGGCGGGAGTGGGGATTCTCCTTCAAATAATGATGTTGGTTCTGTCTTTCGTGTTAGGTCACATCCTTCGTCGCAAGAAGATTTACGTTCTTCCCGAAGCCAGCGCTTCTCTTCTCATTGGCTTGCTCGTTGGTACACTCGCTAACATTTCTCACACTCAAACTAGTATCAGGGCGTGGTTCAACTTTCACGAGGAGTTTTTCTTCCTCTTCCTTTTACCTCCCATAATATTTCAGTCTGGCTTCAGTCTCTCGCCTAAACCTTTTTTCTCTAATTTTGGAGCTATTGTCACGTTTGCTATATTCGGCACCTTTCTGGCTTCCATTGTGACGGGTGTCTTAGTTTATATTGGCGGATTGATGTACCTCATGTACAGATTACCTTTTGTTGAGTGTCTAATGTTTGGTGCACTGATATCCGCAACCGATCCTGTTACTGTTTTGTCCATATTTCAGGAGCTTGGCACAGACGTCAATCTTTATGCCTTGGTTTTTGGAGAATCTGTTTTGAATGATGCAATGGCTATTTCTTTGTACAGGACAATGACAGTGATAAAAAGTCATCCATCTGGACAAAATTTCTTCATGGTGGTTGTTAGATTTTTAGAGACTTTTGTCGGGTCAATGTCTGCTGGTGTTGGAGTTGGTTTTGTATCTGCTCTACTATTTAAATATTCAGGGTTGGATATTGACAATCTTCAGAACTTGGAGAGCTGTCTTTTTGTTCTTTTCCCGTATTTCTCGTACATGCTTGCTGAAGGTCTTGGACTGTCTGGTATTGTATCAATATTGTTCACAGGAATGGTCATGAAGCATTACACATATTCAAATTTGTCACGTAGTTCTCAAAGATTCGTCTCTGCTTTTTTTGAGTTGATATCATCGTTAGCTGAGACATTTGTATTTATCTACATGGGCTTTGATATTGCTATGGAGAAACATAGTTGGTCGCATGTCGGATTTATATTCTTTTCCATTATATTCATTGGAATTGCAAGGTATTATGCTGTAATTTCTATCGTCCCGAGTTATTGA 1107 0.411 MTEGSNPISPVDGMDVTGGSKEQQAAGVGILLQIMMLVLSFVLGHILRRKKIYVLPEASASLLIGLLVGTLANISHTQTSIRAWFNFHEEFFFLFLLPPIIFQSGFSLSPKPFFSNFGAIVTFAIFGTFLASIVTGVLVYIGGLMYLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMTVIKSHPSGQNFFMVVVRFLETFVGSMSAGVGVGFVSALLFKYSGLDIDNLQNLESCLFVLFPYFSYMLAEGLGLSGIVSILFTGMVMKHYTYSNLSRSSQRFVSAFFELISSLAETFVFIYMGFDIAMEKHSWSHVGFIFFSIIFIGIARYYAVISIVPSY 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1026g00002 368 PANTHER SODIUM/HYDROGEN EXCHANGER 14 363 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vium1026g00002 368 PRINTS Na+/H+ exchanger signature 91 102 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium1026g00002 368 PRINTS Na+/H+ exchanger signature 105 119 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium1026g00002 368 PRINTS Na+/H+ exchanger signature 160 170 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium1026g00002 368 PRINTS Na+/H+ exchanger signature 120 128 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium1026g00002 368 MobiDBLite consensus disorder prediction 1 20 - -
Vium1026g00002 368 Gene3D - 153 205 - -
Vium1026g00002 368 NCBIfam sodium/hydrogen exchanger 3 35 364 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium1026g00002 368 Pfam Sodium/hydrogen exchanger family 36 364 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1026g00002 Vium-Chr1026 1149 6030 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1026g00002 20 343 Antiporters AT3G05030 34.639 1.88e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1026g00002 K14724 - gmx:100810105 611.683