Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10267g00001 ATGATCATGGAACCAAATCCAACTTCAGATCATAGTTTGGACTGGTTTGAAGGTTCTGTTTCTTTCTTTCCACTTCCTCCATTCTTAGACGATCCATATAACTGTAGTGACATCCAACTGTGGGATCAAGACATAAGCAGCCATTATCAAACTGATGCTAATACCAGTTCCCCTAATGCCACCAACATTGCAACTACCACAACACCCCCTGAGCCTTGTGCTTCTAACAACCTTCCACTCTCTGATTTGCCCAAGAAAAGAAGTGCCACTGATGATTCAAGTCTCGGACAACCACAGAACCACAAGCACAAGAAAATCAAGAGCAAACCATTGAATAATGAAGCAGATAGTGGAGACGCAGAAGGGACAACCACAGTTAGAAAACCTGGTGGGAACAAGAAAGGTGCTGCTAAGGGTGTGGCAAATAACTGCAACAATAAGGAAGGAAGGTGGGCTGAACAGTTGCTCAACCCTTGTGCTGCAGCCATAACTGGTGGAAATCTGACCCGTGTGCAACACCTCTTGTATGTTCTCCATGAGTTAGCTTCACCTACGGGTGATGCTAACCACAGGCTTGCAGCACATGGTCTTAAAGCACTGACACACCACTTATCGTCTTCTCTAGCATCTACCTCTACAGGGTACATGACTTTTGCATCTACTGAGCCACGGTTCTTTCAAAAGACACTACTCAAGTTCTATGAGGTTAGCCCTTGGTTTTCTTTTCCAAACAACATAGCAAATGCTTCCATCCTTCAAGTTCTTGGGGAAGACAATGACAATTCGCGCACCCTTCACATCCTTGACATTGGAGCCTCTCATGGCATGCAATGGCCAACATTTCTAGAGGCCTTGAGTCGCAGACCTGGTGGACCTCCTCCACTGGTTCGCCTCACTGTTGTCACGGCTTCTTCCACTGAAATTGACACCCCATTTTCTATTGGTCCTCCCGGTGACAACTTCTCATCTAGATTACTTGGTTTTGCTCAGTTAATGAACGTGAATTTGCAGATTAAAAGGCTAGATAATTGTCCATTACAGACACTGAGCGCTCAAAGTGTTGACACCTCCCCGGATGAAATCTTTGTTGTTTGTGCGCAGTTTAGGCTGCATCAGTTAAGTCACAATAGCACTGATGAAAAGAGTGAGTTTCTGAAAGTGCTGAGGAACATGGAGCCCAAAGGGGTGATACTAAGTGATAACAACATGGAATGTTGTTGCAGTGGTTGTGGGGATTTTGCCATGGGGTTCTCTCGAAGGGTGGAGTACTTGTGGAAGTTTTTGGACTCGACAAGCTCAGCGTTTAAGGGTCGTGACAGTGATGAAAGGAGAGTGATGGAAGGTGAGGCAGCAAAGGCATTGACAAACCAGCGAGAGATGAATGAAGGGAAGGAAAAATGGTGTGAGAGTATGAAAGAAGCCGGGTTTGTGGGGGAAGTACTTGGTGAGGATGCAATAGATGGAGGTAGAGCTTTGCTGAGAAAGTATGATACTAATTGGGAGATGAAAGTTGAAGATGACAATAGAAGTGTAGGACTATGGTGGAAGGGGCAACCTGTTTCTTTCTGCACCTTGTGGAAGCTGGATGGGAATGATCAGAGCTCAACATTCACATCATGA 1620 0.4537 MIMEPNPTSDHSLDWFEGSVSFFPLPPFLDDPYNCSDIQLWDQDISSHYQTDANTSSPNATNIATTTTPPEPCASNNLPLSDLPKKRSATDDSSLGQPQNHKHKKIKSKPLNNEADSGDAEGTTTVRKPGGNKKGAAKGVANNCNNKEGRWAEQLLNPCAAAITGGNLTRVQHLLYVLHELASPTGDANHRLAAHGLKALTHHLSSSLASTSTGYMTFASTEPRFFQKTLLKFYEVSPWFSFPNNIANASILQVLGEDNDNSRTLHILDIGASHGMQWPTFLEALSRRPGGPPPLVRLTVVTASSTEIDTPFSIGPPGDNFSSRLLGFAQLMNVNLQIKRLDNCPLQTLSAQSVDTSPDEIFVVCAQFRLHQLSHNSTDEKSEFLKVLRNMEPKGVILSDNNMECCCSGCGDFAMGFSRRVEYLWKFLDSTSSAFKGRDSDERRVMEGEAAKALTNQREMNEGKEKWCESMKEAGFVGEVLGEDAIDGGRALLRKYDTNWEMKVEDDNRSVGLWWKGQPVSFCTLWKLDGNDQSSTFTS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10267g00001 539 MobiDBLite consensus disorder prediction 49 139 - -
Vium10267g00001 539 MobiDBLite consensus disorder prediction 49 75 - -
Vium10267g00001 539 ProSiteProfiles GRAS family profile. 143 527 IPR005202 -
Vium10267g00001 539 Pfam GRAS domain family 153 527 IPR005202 -
Vium10267g00001 539 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 134 515 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10267g00001 Vium-Chr10267 323 2561 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10267g00001 1 527 GRAS Transcription Factor Family AT3G13840 51.188 2.86e-173 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium10267g00001 GRAS 2.5e-73 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10267g00001 - - vun:114166202 964.911